View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7819_high_11 (Length: 223)
Name: NF7819_high_11
Description: NF7819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7819_high_11 |
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| [»] scaffold0100 (1 HSPs) |
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Alignment Details
Target: scaffold0100 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 48365 - 48566
Alignment:
| Q |
8 |
cgaagaatatttatcaattttattgatgatttgtcacttttagtaaaatctgttcttgtttcttaattcataagatttgattgataaataaataactata |
107 |
Q |
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| T |
48365 |
cgaagcatatttatcaattttattgatgatttgtcacttttagtaaaatctgttcttgtttcttaattcataagatttgattgataaataaatagctata |
48464 |
T |
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| Q |
108 |
gaaaatgtttatgcaaaatgtccactcaaactagatttacaaattacaatattgcctgatgattgataatttttcacattaatagtgtattgtcattttt |
207 |
Q |
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| T |
48465 |
gaaaatgtttatgcaaaatgtccactcaaactagatttacaaattacaatattgcctgatgattgataatttttcacattaatagtgtattgtcattttt |
48564 |
T |
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| Q |
208 |
aa |
209 |
Q |
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|| |
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| T |
48565 |
aa |
48566 |
T |
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