View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7819_high_3 (Length: 754)
Name: NF7819_high_3
Description: NF7819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7819_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 275 - 745
Target Start/End: Original strand, 53295308 - 53295791
Alignment:
| Q |
275 |
ttgtcaaaagatcagtaaggtgtgtgtgtagtagtattactattattgtatcgaaaatttatattcaatcattggatatttttaaccaatcaaacctttg |
374 |
Q |
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| T |
53295308 |
ttgtcaaaagatcagtaaggtgtgtgtgtagtagtattactattattgtatcgaaattttatattcaatcattggatatttctaaccaatcaaacctttg |
53295407 |
T |
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| Q |
375 |
tgatttaaattgtcacatacttgcttggttgatacgaaatgaaaacgacggcttggttacaagaattaattgagcctcattagaaggtgacgctcacgta |
474 |
Q |
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| T |
53295408 |
tgatttaaattgtcacatacttgcttggttgatacgaaatgaaaacgacggcttggttacaagaattaattgagcctcattagaaggtgacgctcacgta |
53295507 |
T |
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| Q |
475 |
ttgcttttaagaaaaagttgactttttatcagcttaagtgatacttacctcaatgttttttgaatgagtgatacgtcaatataaagaatagagctaggta |
574 |
Q |
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| T |
53295508 |
ttgcttttaagaaaaagttgactttttatcagcttaagtgatacttacctcaatgttttttgaatgagtgatacgtcaatataaagaatagagctaggta |
53295607 |
T |
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| Q |
575 |
tttttatcatgaacgttacgtgactagac--ttccaagtaattac-----------catgagcatgtgtccaggcttgtgtttttaacttcnnnnnnnca |
661 |
Q |
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| T |
53295608 |
tttttatcatgaacattatgtgactagacagttccaagtaattaccatgagctagacatgagcatgtgtccaggcttgtgtttttaacttttttttctca |
53295707 |
T |
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| Q |
662 |
acaaaatcaacgttacatgatctaaaactttttgacatgaaagnnnnnnngtagttgaaaacggtattgttagtagagaataat |
745 |
Q |
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| T |
53295708 |
acaaaatcaacgttacatgatctaaaactttttgacatgaaagaaaaaaagtagttgaaaacggtattgttagtagagaataat |
53295791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 53295113 - 53295256
Alignment:
| Q |
52 |
gcccccaaaaccttgaaatttttgtttgtgtgtaatactttttaatttcacaccttctggagaaaaaactaatcaagcattcttgtcctaattatataaa |
151 |
Q |
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| T |
53295113 |
gcccccaaaaccttgaaatttttgtttgtgtgtaa--ctttttaatttcacaccttctggagaaaaaactaatcaagcattcttgtcctaattatataaa |
53295210 |
T |
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| Q |
152 |
taataattgtaacnnnnnnngatgtaagaatattgattaacgcaac |
197 |
Q |
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| T |
53295211 |
taataattgtaactttttttgatgtaagaatattgattaacgcaac |
53295256 |
T |
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