View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7819_low_13 (Length: 201)
Name: NF7819_low_13
Description: NF7819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7819_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 5578361 - 5578197
Alignment:
| Q |
22 |
aaaagccaactatttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttctacaaagtaaacttctattataaaggagagag |
121 |
Q |
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| T |
5578361 |
aaaagccaactatttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttctacaaagtaaacttctattataaaggagagag |
5578262 |
T |
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| Q |
122 |
atataagtcgatcttttgaataatctagttatatcatatcatatatacttatttctaatatgaat |
186 |
Q |
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| T |
5578261 |
atataagtcgatcttttgaataatctagttatatcatatcatatatacttatttctaatatgaat |
5578197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 5559750 - 5559694
Alignment:
| Q |
33 |
atttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttct |
90 |
Q |
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| T |
5559750 |
atttaagcaattcatgatagtaagc-aaatgtcctgccacgcgtatttttcattttct |
5559694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 5551200 - 5551145
Alignment:
| Q |
33 |
atttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttct |
90 |
Q |
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| T |
5551200 |
atttaagaaattcatgatagtaagc-aaatg-tctaccacgcgtatatttcattttct |
5551145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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