View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7819_low_4 (Length: 663)

Name: NF7819_low_4
Description: NF7819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7819_low_4
NF7819_low_4
[»] chr3 (20 HSPs)
chr3 (333-650)||(26009301-26009618)
chr3 (92-172)||(26008317-26008397)
chr3 (405-496)||(3295156-3295248)
chr3 (405-496)||(8022125-8022216)
chr3 (536-631)||(24749465-24749560)
chr3 (430-496)||(11834548-11834614)
chr3 (525-620)||(45759337-45759432)
chr3 (448-496)||(8853932-8853980)
chr3 (333-400)||(14282143-14282210)
chr3 (448-496)||(12793723-12793771)
chr3 (356-400)||(14403173-14403217)
chr3 (525-611)||(10867152-10867237)
chr3 (404-455)||(31414431-31414482)
chr3 (448-493)||(12775173-12775218)
chr3 (16-45)||(26008230-26008259)
chr3 (448-496)||(25661192-25661240)
chr3 (448-496)||(25667597-25667645)
chr3 (448-496)||(25674002-25674050)
chr3 (448-496)||(25680676-25680724)
chr3 (448-496)||(25688980-25689028)
[»] chr8 (11 HSPs)
chr8 (406-496)||(17624916-17625007)
chr8 (405-496)||(23638109-23638201)
chr8 (405-496)||(24382482-24382575)
chr8 (405-496)||(18822620-18822712)
chr8 (405-496)||(24622569-24622661)
chr8 (405-496)||(24551813-24551905)
chr8 (404-455)||(25608246-25608297)
chr8 (525-575)||(43254364-43254414)
chr8 (404-446)||(45561477-45561519)
chr8 (403-455)||(17264845-17264897)
chr8 (448-496)||(22883426-22883474)
[»] chr5 (8 HSPs)
chr5 (527-652)||(13720590-13720715)
chr5 (405-496)||(39606949-39607040)
chr5 (448-496)||(19266658-19266706)
chr5 (532-612)||(26308825-26308905)
chr5 (405-496)||(22949503-22949595)
chr5 (405-452)||(10178960-10179007)
chr5 (418-496)||(22911200-22911279)
chr5 (525-561)||(10487553-10487589)
[»] chr4 (11 HSPs)
chr4 (405-496)||(20597752-20597844)
chr4 (525-567)||(10426521-10426563)
chr4 (450-496)||(21958064-21958110)
chr4 (525-575)||(37615021-37615071)
chr4 (525-566)||(955250-955291)
chr4 (532-613)||(41143769-41143850)
chr4 (448-492)||(6407460-6407504)
chr4 (525-561)||(8655720-8655756)
chr4 (448-496)||(11774604-11774652)
chr4 (418-496)||(19076157-19076236)
chr4 (405-453)||(21958097-21958145)
[»] scaffold0333 (1 HSPs)
scaffold0333 (409-496)||(4303-4391)
[»] chr6 (6 HSPs)
chr6 (525-640)||(24749098-24749213)
chr6 (448-496)||(5486583-5486631)
chr6 (405-496)||(14352594-14352685)
chr6 (448-496)||(19729202-19729250)
chr6 (448-496)||(19991962-19992009)
chr6 (446-478)||(22524483-22524515)
[»] scaffold0058 (1 HSPs)
scaffold0058 (333-399)||(73323-73389)
[»] chr2 (5 HSPs)
chr2 (430-500)||(23157324-23157394)
chr2 (430-500)||(23568581-23568651)
chr2 (526-640)||(43782604-43782717)
chr2 (405-496)||(28772652-28772744)
chr2 (405-493)||(22575229-22575319)
[»] chr1 (5 HSPs)
chr1 (405-496)||(15807031-15807124)
chr1 (448-496)||(21199481-21199529)
chr1 (544-614)||(42613294-42613364)
chr1 (525-566)||(6892913-6892954)
chr1 (444-496)||(20406443-20406493)
[»] scaffold0412 (1 HSPs)
scaffold0412 (448-496)||(1462-1510)
[»] scaffold0190 (1 HSPs)
scaffold0190 (405-496)||(68-160)
[»] scaffold0018 (1 HSPs)
scaffold0018 (448-496)||(50384-50432)
[»] chr7 (12 HSPs)
chr7 (525-565)||(5326234-5326274)
chr7 (414-496)||(16064840-16064924)
chr7 (404-455)||(21677300-21677351)
chr7 (525-636)||(41338976-41339087)
chr7 (544-630)||(38990546-38990632)
chr7 (448-493)||(26150224-26150269)
chr7 (525-589)||(692228-692291)
chr7 (525-561)||(9534129-9534165)
chr7 (448-496)||(15002553-15002601)
chr7 (448-480)||(20912238-20912270)
chr7 (526-566)||(42565291-42565331)
chr7 (518-566)||(46993675-46993723)
[»] scaffold0118 (1 HSPs)
scaffold0118 (448-496)||(17358-17405)
[»] scaffold0029 (1 HSPs)
scaffold0029 (525-561)||(135283-135319)
[»] scaffold0003 (1 HSPs)
scaffold0003 (418-496)||(218055-218135)
[»] scaffold0002 (3 HSPs)
scaffold0002 (525-561)||(313110-313146)
scaffold0002 (525-561)||(321789-321825)
scaffold0002 (525-561)||(328564-328600)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 333 - 650
Target Start/End: Original strand, 26009301 - 26009618
Alignment:
Q  333 aaagttaaagaatattccgggtcaaagagtgtgtgaaagagggatcttatgtcaaaaattggggtatggcattatgtatatttgctatgcatgaattctt 432  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  26009301 aaagtcaaagaatattccgggtcaaagagtttgtgaaagagggatcttatgtcaaaaattggggtatgacattatgtatatttgctaagcattaattctt 26009400  T
Q  433 gaatgtttatgtttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggttaaatacatgcacaagaatgcgaatttccttttttat 532  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26009401 gaatgtttatgtttgattatgtttaattgtgaattgtggactaacccccagtggtcgtttggttaaatacatgcacaagaatgcgaatttccttttttat 26009500  T
Q  533 ttgaagaagccaaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactacagtacaacaaagtatgtcaat 632  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  26009501 ttgaagaagccaaaatgaaattatataaccaaaaccaaaagcagttctcaagcacaagatgtgcctaaaaaactactatagtacaacaaagtatgtcaat 26009600  T
Q  633 aatggaagatgaacacga 650  Q
    ||||||||||||||||||    
T  26009601 aatggaagatgaacacga 26009618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 26008317 - 26008397
Alignment:
Q  92 gcaaaagtcttgattaattaaagatgtatattatttgaataacaacttttgagataatttacaactcaattaaagatatac 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26008317 gcaaaagtcttgattaattaaagatgtatattatttgaataacaacttttgagataacttacaactcaattaaagatatac 26008397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 405 - 496
Target Start/End: Original strand, 3295156 - 3295248
Alignment:
Q  405 tatgtatatttgctatgcatgaattctt-gaatgtttatgtttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||| || |||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  3295156 tatgtatatgtgttatgcatgaaatctttgaatgcttatgtttgattatgtttaattgtgaattgtggactaacccccaatggttgtttggtt 3295248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 405 - 496
Target Start/End: Complemental strand, 8022216 - 8022125
Alignment:
Q  405 tatgtatatttgctatgcatgaattcttgaatgtttatgtttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||| | ||||||||||| |||||||| |||||||| |||||||||||||||||| | || ||||||||||||| ||| |||||||    
T  8022216 tatgtatattcgatatgcatgaatccttgaatggttatgtttgattatgtttaattgtgaaatatgaactaaccccaagtagtcatttggtt 8022125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 536 - 631
Target Start/End: Original strand, 24749465 - 24749560
Alignment:
Q  536 aagaagccaaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactacagtacaacaaagtatgtcaa 631  Q
    ||||| |||||||| |||||||||||||||| ||||||||||| ||||||| |||  ||||||||| ||||| |||||||||||| ||| ||||||    
T  24749465 aagaaaccaaaatggaattatataaccaaaaccaaaagcagttatcaagcataaggtgtgcctaaataactattacagtacaacagagtttgtcaa 24749560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 496
Target Start/End: Original strand, 11834548 - 11834614
Alignment:
Q  430 cttgaatgtttatgtttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||| |||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  11834548 cttgaatgcttatgtttgattatgtttaattatgaattgtgtactaaccccaactggtcgtttggtt 11834614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 620
Target Start/End: Original strand, 45759337 - 45759432
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactacagtacaaca 620  Q
    |||||| ||||||||| |||||||| ||||| |||||||||||| |||||||||  ||||||||||  ||||||| | |||| |||||||| ||||    
T  45759337 ttttttttttgaagaaaccaaaatggaattaaataaccaaaatcgaaagcagttaccaagcacaaggtgtgcctagataactcctacagtataaca 45759432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 8853932 - 8853980
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  8853932 attatgtttaattgtgaattgtggactaacccttagtggtcgtttggtt 8853980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 14282210 - 14282143
Alignment:
Q  333 aaagttaaagaatattccgggtcaaagagtgtgtgaaagagggatcttatgtcaaaaattggggtatg 400  Q
    ||||| |||||||||| |||||||||| |||||||| || | || ||||||||||||| |||||||||    
T  14282210 aaagtcaaagaatattgcgggtcaaagggtgtgtgagagtgtgaccttatgtcaaaaaatggggtatg 14282143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 12793771 - 12793723
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||| |||| ||||||||||||||||||| | |||||||||||||    
T  12793771 attatgttaaattatgaattgtggactaacccctaatggtcgtttggtt 12793723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 14403173 - 14403217
Alignment:
Q  356 aaagagtgtgtgaaagagggatcttatgtcaaaaattggggtatg 400  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||    
T  14403173 aaagagtgtgtgaaagtaggatcttaagtcaaaaattggggtatg 14403217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 611
Target Start/End: Original strand, 10867152 - 10867237
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaaatcaaaagcagt-tctcaagcacaagaagtgcctaaaaaactactac 611  Q
    |||||| |||||| |||||||||||||||||||| ||||||| ||| |||| | |||| ||||||||  |||||||||| ||||||||    
T  10867152 ttttttttttgaacaagccaaaatgaaattatattaccaaaa-caatagcaatctctc-agcacaaggtgtgcctaaaagactactac 10867237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 31414431 - 31414482
Alignment:
Q  404 ttatgtatatttgctatgcatgaattcttgaatgtttatgtttaattatgtt 455  Q
    |||||||||| || |||||||||||||||| ||||||||||||  |||||||    
T  31414431 ttatgtatatgtgttatgcatgaattcttgcatgtttatgtttgtttatgtt 31414482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 493
Target Start/End: Original strand, 12775173 - 12775218
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttg 493  Q
    |||||||||||||||||||| || ||||||| |||||||| |||||    
T  12775173 attatgtttaattgtgaattatgaactaacctcaagtggttgtttg 12775218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 26008230 - 26008259
Alignment:
Q  16 gatggagctagctagatattatgacattgg 45  Q
    ||||||||||||||||||||||||||||||    
T  26008230 gatggagctagctagatattatgacattgg 26008259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 25661192 - 25661240
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||| ||||||||||||||  | ||||||||| |||||||||||||||    
T  25661192 attatatttaattgtgaattacgaactaacccccagtggtcgtttggtt 25661240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 25667597 - 25667645
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||| ||||||||||||||  | ||||||||| |||||||||||||||    
T  25667597 attatatttaattgtgaattacgaactaacccccagtggtcgtttggtt 25667645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 25674002 - 25674050
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||| ||||||||||||||  | ||||||||| |||||||||||||||    
T  25674002 attatatttaattgtgaattacgaactaacccccagtggtcgtttggtt 25674050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 25680676 - 25680724
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||| ||||||||||||||  | ||||||||| |||||||||||||||    
T  25680676 attatatttaattgtgaattacgaactaacccccagtggtcgtttggtt 25680724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 25688980 - 25689028
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||| ||||||||||||||  | ||||||||| |||||||||||||||    
T  25688980 attatatttaattgtgaattacgaactaacccccagtggtcgtttggtt 25689028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 406 - 496
Target Start/End: Original strand, 17624916 - 17625007
Alignment:
Q  406 atgtatatttgctatgcatgaa-ttcttgaatgtttatgtttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| || ||||||| | |||||||||||||||    
T  17624916 atgtatatgtgctatgcatgaaattcttgaatttttatgtttgattatgtttaattgtgaattatgaactaaccaccagtggtcgtttggtt 17625007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 405 - 496
Target Start/End: Complemental strand, 23638201 - 23638109
Alignment:
Q  405 tatgtatatttgctatgcatgaattcttgaatgtttatgtttaattat-gtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||| || ||||||||||| |||||||| |||||||| |||||  ||||||| |||| |||||||||||||| |||| ||||||||||    
T  23638201 tatgtatatgtgatatgcatgaatccttgaatgcttatgtttgattatactttaattatgaactgtggactaacccctagtgctcgtttggtt 23638109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 405 - 496
Target Start/End: Complemental strand, 24382575 - 24382482
Alignment:
Q  405 tatgtatatttgctatgcatgaatt-cttgaatgtttatgtttaattatgt-ttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||| || |||||||||| | |||||||| |||||||| ||||||| || |||||||||| || ||||||||| |||||||||||||||    
T  24382575 tatgtatatatgatatgcatgaaatacttgaatgcttatgtttgattatgtcttgattgtgaattatgaactaacccccagtggtcgtttggtt 24382482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 496
Target Start/End: Complemental strand, 18822712 - 18822620
Alignment:
Q  405 tatgtatatttgctatgcatgaattcttgaatgtttatgtttaattatg-tttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||||| |||||||||||| |||||||| |||||||| |||||| ||||| |||||  |||| ||||||||  |||| || |||||||    
T  18822712 tatgtatattttctatgcatgaatccttgaatgattatgtttgattatgctttaactgtgagatgtgaactaaccctcagtgatcctttggtt 18822620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 496
Target Start/End: Complemental strand, 24622661 - 24622569
Alignment:
Q  405 tatgtatatttgctatgcatg-aattcttgaatgtttatgtttaattatg-tttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||| | ||||||||| ||| ||||||||||||||||| |||||| ||||||| |||  ||| |||||||||| |||||||||| ||||    
T  24622661 tatgtatatgtactatgcatgcaatccttgaatgtttatgtttgattatgctttaattatgagatgt-gactaacccctagtggtcgttcggtt 24622569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 496
Target Start/End: Original strand, 24551813 - 24551905
Alignment:
Q  405 tatgtatatttgctatgcatgaattc-ttgaatgtttatgtttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||  |||||||| |||| || ||||||| |||||||| |||||  || ||| ||||||||| ||||||||  |||||||||||||||    
T  24551813 tatgtataggtgctatgcttgaaatccttgaatgcttatgtttgattatacttgattatgaattgtgaactaaccctcagtggtcgtttggtt 24551905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 25608297 - 25608246
Alignment:
Q  404 ttatgtatatttgctatgcatgaattcttgaatgtttatgtttaattatgtt 455  Q
    |||||||||| |||||||||||||||||| |||| ||||||||  |||||||    
T  25608297 ttatgtatatgtgctatgcatgaattcttaaatgcttatgtttgtttatgtt 25608246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 575
Target Start/End: Complemental strand, 43254414 - 43254364
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaaatcaaaagca 575  Q
    |||||| |||||| |||||||||||||||||||| ||||||| ||| ||||    
T  43254414 ttttttttttgaacaagccaaaatgaaattatattaccaaaaacaatagca 43254364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 45561477 - 45561519
Alignment:
Q  404 ttatgtatatttgctatgcatgaattcttgaatgtttatgttt 446  Q
    |||||||||| |||||||||||||| |||||||| ||||||||    
T  45561477 ttatgtatatgtgctatgcatgaatccttgaatgcttatgttt 45561519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 17264897 - 17264845
Alignment:
Q  403 attatgtatatttgctatgcatgaattcttgaatgtttatgtttaattatgtt 455  Q
    ||||||||||| || ||||||||||| ||||||||  |||||||| |||||||    
T  17264897 attatgtatatgtgttatgcatgaatccttgaatgcctatgtttatttatgtt 17264845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 22883474 - 22883426
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||||||||| |||| || ||||||||| ||||||| |||||||    
T  22883474 attatgtttaattgtaaattatgaactaacccctagtggtcatttggtt 22883426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 527 - 652
Target Start/End: Complemental strand, 13720715 - 13720590
Alignment:
Q  527 ttttatttgaagaagccaaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactacagtacaacaaagtat 626  Q
    |||| ||| ||||| |||||||| ||||| |||||||||| |||||||||||  |||||| |||| ||||||||| |||||||||| || |||| ||| |    
T  13720715 tttttttttaagaaaccaaaatggaattaaataaccaaaaccaaaagcagttaccaagcataagatgtgcctaaataactactacaatataacagagttt 13720616  T
Q  627 gtcaataatggaagatgaacacgaaa 652  Q
    ||||  |||| |||| ||||||||||    
T  13720615 gtcacaaatgaaagaagaacacgaaa 13720590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 405 - 496
Target Start/End: Complemental strand, 39607040 - 39606949
Alignment:
Q  405 tatgtatatttgctatgcatgaattcttgaatgtttatgtttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||||| |||| |||||| ||| |||  |||||||  ||||||||||||||||||   || ||||||||| |||||||||||||||    
T  39607040 tatgtatatttgatatgtatgaatccttcaatacttatgttagattatgtttaattgtgaaaactgaactaacccccagtggtcgtttggtt 39606949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 19266706 - 19266658
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||||||||||||| || ||||||||| |||||||||||||||    
T  19266706 attatgtttaattgtgaattatgaactaacccccagtggtcgtttggtt 19266658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 532 - 612
Target Start/End: Original strand, 26308825 - 26308905
Alignment:
Q  532 tttgaagaagccaaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactaca 612  Q
    ||||||||| |||||||| ||||| |||||||||| |||||||||||  ||||||||||  ||||||| | ||||| ||||    
T  26308825 tttgaagaaaccaaaatggaattaaataaccaaaaccaaaagcagttaccaagcacaaggtgtgcctagataactattaca 26308905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 496
Target Start/End: Complemental strand, 22949595 - 22949503
Alignment:
Q  405 tatgtatatttgctatgcatgaattc-ttgaatgtttatgtttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||||| |||||| ||| || |||||||  ||||||| ||||| ||||||| || | || | ||||||||| |||||||||||||||    
T  22949595 tatgtatatttgatatgcaggaaatccttgaatgcctatgtttgattatatttaattatggaatgcgaactaacccccagtggtcgtttggtt 22949503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 452
Target Start/End: Original strand, 10178960 - 10179007
Alignment:
Q  405 tatgtatatttgctatgcatgaattcttgaatgtttatgtttaattat 452  Q
    ||||||||| ||||||||||||||  |||||||||||||||| |||||    
T  10178960 tatgtatatgtgctatgcatgaatctttgaatgtttatgtttgattat 10179007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 22911279 - 22911200
Alignment:
Q  418 tatgcatgaattcttgaatgtttatgtttaattatgttta-attgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||||  ||||| | ||||| || ||||| |||  ||| ||||||||||||||||||| |||||||||||||||    
T  22911279 tatgcatgaatcattgaacgcttatgcttgattatattttgattatgaattgtggactaaccccgagtggtcgtttggtt 22911200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 561
Target Start/End: Complemental strand, 10487589 - 10487553
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataac 561  Q
    |||||| |||||| |||||||||||||||||||||||    
T  10487589 ttttttttttgaaaaagccaaaatgaaattatataac 10487553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 405 - 496
Target Start/End: Original strand, 20597752 - 20597844
Alignment:
Q  405 tatgtatatttgctatgcatgaattcttgaatgtttatgtttaattatgt-ttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||| || ||||||||||| |||||||| ||||| || ||||| | || ||||||||||||||||||||||| |||||||||||||||    
T  20597752 tatgtatatgtgttatgcatgaatccttgaatgattatgcttgattatatcttgattgtgaattgtggactaacccccagtggtcgtttggtt 20597844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 567
Target Start/End: Complemental strand, 10426563 - 10426521
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaaat 567  Q
    |||||| |||||| |||||||||||||||||||| ||||||||    
T  10426563 ttttttttttgaacaagccaaaatgaaattatattaccaaaat 10426521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 496
Target Start/End: Complemental strand, 21958110 - 21958064
Alignment:
Q  450 tatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||| ||| |||||||||||||||||||||| ||| ||||||||    
T  21958110 tatgtttgattatgaattgtggactaaccccaagcggttgtttggtt 21958064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 575
Target Start/End: Original strand, 37615021 - 37615071
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaaatcaaaagca 575  Q
    |||||| |||||| |||||||||||||||||||| ||||||| ||| ||||    
T  37615021 ttttttttttgaacaagccaaaatgaaattatattaccaaaaacaatagca 37615071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 566
Target Start/End: Complemental strand, 955291 - 955250
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaaa 566  Q
    |||||| |||||| |||||||||||||||||||| |||||||    
T  955291 ttttttttttgaacaagccaaaatgaaattatattaccaaaa 955250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 613
Target Start/End: Complemental strand, 41143850 - 41143769
Alignment:
Q  532 tttgaagaagccaaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactacag 613  Q
    |||| |||||| |||||| |||||||||||||||   ||||||  ||| ||||||||||| |||||||  |||| |||||||    
T  41143850 tttggagaagctaaaatggaattatataaccaaaccaaaaagcgattcccaagcacaagatgtgcctaggaaaccactacag 41143769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 492
Target Start/End: Complemental strand, 6407504 - 6407460
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgttt 492  Q
    |||||||||||||||||||| || ||||||||  |||||||||||    
T  6407504 attatgtttaattgtgaattatgaactaaccctcagtggtcgttt 6407460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 561
Target Start/End: Complemental strand, 8655756 - 8655720
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataac 561  Q
    |||||| |||||| |||||||||||||||||||||||    
T  8655756 ttttttttttgaaaaagccaaaatgaaattatataac 8655720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 11774652 - 11774604
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||||||| |||||| || ||||||||| |||||| ||||||||    
T  11774652 attatgtttaattatgaattatgaactaacccccagtggttgtttggtt 11774604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 19076236 - 19076157
Alignment:
Q  418 tatgcatgaattc-ttgaatgtttatgtttaattatg-tttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||| || ||||||| |||||||| |||||  |||||||||||| |||| ||||||| | |||||||||||||||    
T  19076236 tatgcatgaaatccttgaatgcttatgtttgattatactttaattgtgaaatgtgaactaacctc-agtggtcgtttggtt 19076157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 453
Target Start/End: Complemental strand, 21958145 - 21958097
Alignment:
Q  405 tatgtatatttgctatgcatgaattcttgaatgtttatgtttaattatg 453  Q
    |||||||||||||||| ||||||| ||||||||  ||||||| ||||||    
T  21958145 tatgtatatttgctatacatgaatccttgaatgcctatgtttgattatg 21958097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 4303 - 4391
Alignment:
Q  409 tatatttgctatgcatgaattcttgaatgtttatgtttaattat-gtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||| |||||||||||||| |||||||| |||||||| |||||  |||||||||| | || | |||||||||||||||||||||||||    
T  4303 tatatgtgctatgcatgaatccttgaatgcttatgtttgattatactttaattgtggaatgcgaactaaccccaagtggtcgtttggtt 4391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 24749098 - 24749213
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactacagtacaacaaagt 624  Q
    |||||| |||||| || ||||||| |||||||| || ||||   || |||||||| ||||||||| | |||||||   ||| ||||||||||||||||||    
T  24749098 ttttttttttgaacaaaccaaaattaaattataaaatcaaaccaaatagcagttcccaagcacaatatgtgcctaggtaaccactacagtacaacaaagt 24749197  T
Q  625 atgtcaataatggaag 640  Q
    |||||| |||||||||    
T  24749198 atgtcagtaatggaag 24749213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 5486583 - 5486631
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||||||||||||| || | ||||||| |||||||||||||||    
T  5486583 attatgtttaattgtgaattatgaaataacccccagtggtcgtttggtt 5486631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 496
Target Start/End: Complemental strand, 14352685 - 14352594
Alignment:
Q  405 tatgtatatttgctatgcatgaattcttgaatgtttatgtttaattat-gtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||| |||||||||||||| |||||||| || ||||| |||||  ||||||| |||  |||| ||||||| | |||||||||||||||    
T  14352685 tatgtatatgtgctatgcatgaatccttgaatgcttgtgtttgattatactttaattatgagatgtgaactaacctc-agtggtcgtttggtt 14352594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 19729202 - 19729250
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||||||||||| | || ||||| |||||||||||||||||||    
T  19729202 attatgtttaattgtgaaatctgaactaatcccaagtggtcgtttggtt 19729250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 19991962 - 19992009
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||||||||||||| || ||||||||| ||||||| |||||||    
T  19991962 attatgtttaattgtgaattatgaactaacccc-agtggtcatttggtt 19992009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 478
Target Start/End: Original strand, 22524483 - 22524515
Alignment:
Q  446 taattatgtttaattgtgaattgtggactaacc 478  Q
    ||||||||||||||| |||||||||||||||||    
T  22524483 taattatgtttaattatgaattgtggactaacc 22524515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 73323 - 73389
Alignment:
Q  333 aaagttaaagaatattccgggtcaaagagtgtgtgaaagagggatcttatgtcaaaaattggggtat 399  Q
    ||||| ||||||||||||||||||||||| ||||||||| | ||||||| || ||||||||||||||    
T  73323 aaagtcaaagaatattccgggtcaaagagcgtgtgaaagtgagatcttacgtaaaaaattggggtat 73389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 23157394 - 23157324
Alignment:
Q  430 cttgaatgtttatgtttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggttaaat 500  Q
    |||||||| |||||||| ||||||||||||| |||| | || ||||||||| |||||||||||||| ||||    
T  23157394 cttgaatgcttatgtttgattatgtttaattatgaaatctgaactaacccctagtggtcgtttggtcaaat 23157324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 23568651 - 23568581
Alignment:
Q  430 cttgaatgtttatgtttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggttaaat 500  Q
    |||||||| |||||||| ||||||||||||| |||| | || ||||||||| |||||||||||||| ||||    
T  23568651 cttgaatgcttatgtttgattatgtttaattatgaaatctgaactaacccctagtggtcgtttggtcaaat 23568581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 526 - 640
Target Start/End: Complemental strand, 43782717 - 43782604
Alignment:
Q  526 tttttatttgaagaagccaaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactacagtacaacaaagta 625  Q
    ||||| ||| || ||||||||||| |||||||||||| |||  ||||| || || ||||||||||  ||||||| ||||||| | |||||||||| ||||    
T  43782717 ttttttttttaacaagccaaaatggaattatataacc-aaacaaaaagtagatcccaagcacaaggtgtgcctagaaaactagtgcagtacaacagagta 43782619  T
Q  626 tgtcaataatggaag 640  Q
     |||| ||| |||||    
T  43782618 agtcagtaacggaag 43782604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 496
Target Start/End: Complemental strand, 28772744 - 28772652
Alignment:
Q  405 tatgtatatttgctatgcatgaattcttgaatgtttatgtttaattatg-tttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||| ||  ||| |||||  |||||||| |||||||| |||||  |||||||||||| |||| ||||||||| |||| ||||||||||    
T  28772744 tatgtatatgtgtcatgtatgaacccttgaatgcttatgtttgattatactttaattgtgaaatgtgaactaacccccagtgatcgtttggtt 28772652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 493
Target Start/End: Complemental strand, 22575319 - 22575229
Alignment:
Q  405 tatgtatatttgctatgcatgaattc-ttgaatgtttatg-tttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttg 493  Q
    ||||||||| || |||||||||| || || |||| || || ||| |||||||||||||||||||| || |||||||||  |||||||||||    
T  22575319 tatgtatatgtgttatgcatgaaatcattaaatgcttctgctttgattatgtttaattgtgaattatgaactaacccccggtggtcgtttg 22575229  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 496
Target Start/End: Original strand, 15807031 - 15807124
Alignment:
Q  405 tatgtatatttgctatgcatgaattc-ttgaatgtttatgtttaattatg-tttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||| || |||||||||| || ||||||| |||||||| |||||| |||||||||| | |||   |||||||| |||||||||||||||    
T  15807031 tatgtatatgtgttatgcatgaaatccttgaatgcttatgtttgattatgctttaattgtggaatgttatctaacccctagtggtcgtttggtt 15807124  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 21199481 - 21199529
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||| |||||||||||||||| |||||| || |||||||||||||||    
T  21199481 attatgcttaattgtgaattgtgaactaactcctagtggtcgtttggtt 21199529  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 614
Target Start/End: Original strand, 42613294 - 42613364
Alignment:
Q  544 aaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactacagt 614  Q
    |||||| |||||||||||||||| |||||||||||  ||| ||||||  |||| || | ||||||||||||    
T  42613294 aaaatggaattatataaccaaaaccaaaagcagttgccaaacacaaggtgtgcttagataactactacagt 42613364  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 566
Target Start/End: Complemental strand, 6892954 - 6892913
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaaa 566  Q
    |||||| |||||| |||||||||||||||||||| |||||||    
T  6892954 ttttttttttgaacaagccaaaatgaaattatattaccaaaa 6892913  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 20406493 - 20406443
Alignment:
Q  444 tttaattatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||| ||||||||    
T  20406493 tttaattatgtttaatt-tgaattgtgaactaaccccaa-tggtagtttggtt 20406443  T

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Target: scaffold0412 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 1510 - 1462
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||||||||||||| || ||||||| | |||||||||||||||    
T  1510 attatgtttaattgtgaattatgaactaacctccagtggtcgtttggtt 1462  T

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Target: scaffold0190 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 496
Target Start/End: Complemental strand, 160 - 68
Alignment:
Q  405 tatgtatatttgctatgcatgaattcttgaatgtttatgtttaattat-gtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||| |||| || |||| |||||| ||||||||||||||||| |||||  ||||||| |||||||||  |||||||| | ||||| |||||||    
T  160 tatgcatatgtgatatgaatgaatccttgaatgtttatgtttgattatactttaattatgaattgtgagctaacccccattggtcatttggtt 68  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 50432 - 50384
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||||||||||||||||| ||||| | | |||||||||||||||    
T  50432 attatgtttaattgtgaattgtgaactaagctccagtggtcgtttggtt 50384  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 565
Target Start/End: Original strand, 5326234 - 5326274
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaa 565  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  5326234 ttttttttttgaacaagccaaaatgaaattatataaccaaa 5326274  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 496
Target Start/End: Complemental strand, 16064924 - 16064840
Alignment:
Q  414 ttgctatgcatgaattcttgaatgtttatgtttaattatg-tttaattgtgaatt-gtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||||||||| ||||||||  ||| ||| |||||  ||||||||||| || ||||||||||||| |||| ||||||||||    
T  16064924 ttgctatgcatgaatccttgaatgcctattttttattataatttaattgtgattttgtggactaacccctagtgatcgtttggtt 16064840  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 21677300 - 21677351
Alignment:
Q  404 ttatgtatatttgctatgcatgaattcttgaatgtttatgtttaattatgtt 455  Q
    |||||||||| |||||||||||||| ||||||||  |||||||| |||||||    
T  21677300 ttatgtatatgtgctatgcatgaatccttgaatgcctatgtttatttatgtt 21677351  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 636
Target Start/End: Original strand, 41338976 - 41339087
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactacagtacaacaaagt 624  Q
    |||||| ||| || || ||||||||||||||||||||||||   ||||||||||| || ||| |||  |||||||  || ||||| | |||||||| |||    
T  41338976 tttttttttttaacaaaccaaaatgaaattatataaccaaatcaaaaagcagttcacacgcataaggtgtgcctaggaatctacttcggtacaacagagt 41339075  T
Q  625 atgtcaataatg 636  Q
    ||| || |||||    
T  41339076 atgccagtaatg 41339087  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 630
Target Start/End: Original strand, 38990546 - 38990632
Alignment:
Q  544 aaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaagaagtgcctaaaaaactactacagtacaacaaagtatgtca 630  Q
    |||||| ||||||||||||| ||| ||||||||||  |||  |||||| |||||||  ||||||||| |  |||||| |||||||||    
T  38990546 aaaatggaattatataaccataataaaaagcagtttccaaatacaagatgtgcctaggaaactactatataacaacagagtatgtca 38990632  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 493
Target Start/End: Original strand, 26150224 - 26150269
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttg 493  Q
    |||| |||||||||||||||||| ||||||||| |||| |||||||    
T  26150224 attaagtttaattgtgaattgtgaactaacccctagtgatcgtttg 26150269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 589
Target Start/End: Complemental strand, 692291 - 692228
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataaccaaaatcaaaagcagttctcaagcacaa 589  Q
    |||||| ||| || ||||||||||||||||||||||||| || ||| ||||||||  ||||||||    
T  692291 tttttttttttaacaagccaaaatgaaattatataaccacaa-caatagcagttccaaagcacaa 692228  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 561
Target Start/End: Original strand, 9534129 - 9534165
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataac 561  Q
    |||||| |||||| |||||||||||||||||||||||    
T  9534129 ttttttttttgaaaaagccaaaatgaaattatataac 9534165  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 15002553 - 15002601
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    ||||||||||||| |||||| || ||||||| | |||||||||||||||    
T  15002553 attatgtttaattttgaattatgaactaacctccagtggtcgtttggtt 15002601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 480
Target Start/End: Original strand, 20912238 - 20912270
Alignment:
Q  448 attatgtttaattgtgaattgtggactaacccc 480  Q
    ||||||||||||||||||||||| |||||||||    
T  20912238 attatgtttaattgtgaattgtgaactaacccc 20912270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 566
Target Start/End: Original strand, 42565291 - 42565331
Alignment:
Q  526 tttttatttgaagaagccaaaatgaaattatataaccaaaa 566  Q
    ||||||||| || |||||||||||||||||||| |||||||    
T  42565291 tttttattttaacaagccaaaatgaaattatattaccaaaa 42565331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 566
Target Start/End: Original strand, 46993675 - 46993723
Alignment:
Q  518 aatttccttttttatttgaagaagccaaaatgaaattatataaccaaaa 566  Q
    |||||| | |||| |||||| |||||||||||||||||||| |||||||    
T  46993675 aatttcttcttttttttgaacaagccaaaatgaaattatattaccaaaa 46993723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 17358 - 17405
Alignment:
Q  448 attatgtttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||||| |||| ||||| ||||||||||| |||||||||||||    
T  17358 attatgtttaatggtgacttgtgaactaaccccaa-tggtcgtttggtt 17405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 561
Target Start/End: Complemental strand, 135319 - 135283
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataac 561  Q
    |||||| |||||| |||||||||||||||||||||||    
T  135319 ttttttttttgaaaaagccaaaatgaaattatataac 135283  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 218055 - 218135
Alignment:
Q  418 tatgcatgaattctt-gaatgtttatgtttaattatg-tttaattgtgaattgtggactaaccccaagtggtcgtttggtt 496  Q
    |||||||||| |||| ||||| | || ||| |||||| |||||||||||||| || ||||||||| || ||||||||||||    
T  218055 tatgcatgaaatctttgaatggtaatatttgattatgctttaattgtgaattatgaactaaccccgagaggtcgtttggtt 218135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 561
Target Start/End: Complemental strand, 313146 - 313110
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataac 561  Q
    |||||| |||||| |||||||||||||||||||||||    
T  313146 ttttttttttgaaaaagccaaaatgaaattatataac 313110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 561
Target Start/End: Complemental strand, 321825 - 321789
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataac 561  Q
    |||||| |||||| |||||||||||||||||||||||    
T  321825 ttttttttttgaaaaagccaaaatgaaattatataac 321789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 561
Target Start/End: Complemental strand, 328600 - 328564
Alignment:
Q  525 ttttttatttgaagaagccaaaatgaaattatataac 561  Q
    |||||| |||||| |||||||||||||||||||||||    
T  328600 ttttttttttgaaaaagccaaaatgaaattatataac 328564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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