View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7819_low_5 (Length: 509)
Name: NF7819_low_5
Description: NF7819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7819_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 37 - 459
Target Start/End: Original strand, 12580373 - 12580795
Alignment:
| Q |
37 |
gatcctggagacataattagaagccattttaatttgcacttccttaagagcaaagtagggagaggcaaaaagcgaagagagaaaaatcagcaaactgaac |
136 |
Q |
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| T |
12580373 |
gatcctggagacataattagaagccattttaatttgcacttccttaagagcaaagcagggagaggcaaaaagcgaagagagaaaaatcagcaaactgaac |
12580472 |
T |
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| Q |
137 |
ttgccagtaagccttcatttcatattgttagaaaatgtcaatgataattacaacaatgtaatcaacatgatcaaaaatcatgttcattttgaatcccaaa |
236 |
Q |
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| T |
12580473 |
ttgccagtaagccttcatttcatattgttagaaaatgtcaaggataattacaacaatgtaatcaacatgatcaaaaatcatgttcattttgaatcccaaa |
12580572 |
T |
|
| Q |
237 |
cacgatgaatgaaagcaatgtaatcctaggcatgtgttatacaaccacaagagttcaaacataaaccagtttgatacgtaacttgcaaataaaatattaa |
336 |
Q |
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| T |
12580573 |
cacgatgaatgaaagcaatgtaatcctaggcatgtgttatacaaccacaagagttcaaacataaaccagtttgatacgtaacttgcaaacaaaatattaa |
12580672 |
T |
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| Q |
337 |
ctcttgnnnnnnnnnnnnnnnnnnnnnnttaggcccatcatcaactagtattttatatgacatggaatcaaagtgcttataaacttgtttggactcagtt |
436 |
Q |
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| T |
12580673 |
gtcttcaaaaatggaaaagaaaaaaaaattaggcccatcatcaactagtattttatatgacatggaatcaaagtgcttataaacttgtttagacgcagtt |
12580772 |
T |
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| Q |
437 |
ctccaatattttccagaaataag |
459 |
Q |
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| T |
12580773 |
ctccaatattttccagaaataag |
12580795 |
T |
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