View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7819_low_6 (Length: 428)
Name: NF7819_low_6
Description: NF7819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7819_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 27442247 - 27442538
Alignment:
| Q |
17 |
catggactacgtatcgcatgtcgcgatgcttattaggctccttttcacagcattgtcttgccaattctgcaatagtcctgaaactctccaagccttcctc |
116 |
Q |
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| T |
27442247 |
catggactacgtatcgcatgtcgggacgcttattaggctccttttcacagcagtgtcttgccaattctgcaatagtcctgaaactctccaagccttcctc |
27442346 |
T |
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| Q |
117 |
gtccattttcattgctggatcaatgacattttcaaatgactgtttgatgaaccattcagcaaggttgatgacattgtcttgtcggctgtcgtcgagtgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27442347 |
gtccattttcattgctggatcaatgacattttcaaatgactgtttgatgaaccattcagcaaggttgatgacattgtcttgttggctgtcgtcgagtgct |
27442446 |
T |
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| Q |
217 |
ctttttccagttatcatccccattagaatcacaccatagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
308 |
Q |
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| T |
27442447 |
ctttttccagttatcatccccattagaatcacaccatagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
27442538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 27444191 - 27444308
Alignment:
| Q |
305 |
atacgttgctttcactgaagttgttggtagctcccctcaaaacttgaattgaaacggccatattaggagcagcttcgacattattttgaatactactcga |
404 |
Q |
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| T |
27444191 |
atacgttgctttcactgaagttgttagtagctcgcctcaaaacttgaattgaaacggccatattagtagcagcttcgacattattttgaatactactcga |
27444290 |
T |
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| Q |
405 |
tggaacactttcatctct |
422 |
Q |
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||||||| |||||||||| |
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| T |
27444291 |
tggaacattttcatctct |
27444308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 11838197 - 11838064
Alignment:
| Q |
22 |
actacgtatcgcatgtcgcgatgcttattaggctccttttcacagcattgtcttgccaattctgcaatagtcctgaaactctccaagccttcctcgtcca |
121 |
Q |
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||||||| || |||||| || ||| |||||||||| || |||| || || || |||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
11838197 |
actacgtgtcccatgtcaggacgctgattaggctcccttgcacaacagtggctagccaatcctgcaatagtcctgaaactctccaagccttcctcgtcga |
11838098 |
T |
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| Q |
122 |
ttttcattgctggatcaatgacattttcaaatga |
155 |
Q |
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| T |
11838097 |
tgtccattgctggatcaatgaccttttcaaatga |
11838064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 11837984 - 11837897
Alignment:
| Q |
220 |
tttccagttatcatccccattagaatcacaccatagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcata |
307 |
Q |
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||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |
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| T |
11837984 |
tttccggttatcatctccataagaatcacaccatagctgtatacgtctacctttgtggtgactcggccagtgactgtgacatatcata |
11837897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 308
Target Start/End: Complemental strand, 11850666 - 11850579
Alignment:
| Q |
221 |
ttccagttatcatccccattagaatcacaccatagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
308 |
Q |
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|||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
11850666 |
ttccggttatcatctccataagaatcacgccatagctgtatacgtctacctttgtggtgactcgaccggtgactgtgacatatcatac |
11850579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 215 - 308
Target Start/End: Original strand, 11855850 - 11855943
Alignment:
| Q |
215 |
ctctttttccagttatcatccccattagaatcacaccatagctgtatacgtctacctttgtggtggctcggccggtggctgtgacatatcatac |
308 |
Q |
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| T |
11855850 |
ctctctttccggttatcatctccataagaatcacgccatagctgtacacgtctaactttgtggtgactcggccggtgactgtgacatatcatac |
11855943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 11850851 - 11850747
Alignment:
| Q |
51 |
aggctccttttcacagcattgtcttgccaattctgcaatagtcctgaaactctccaagccttcctcgtccattttcattgctggatcaatgacattttca |
150 |
Q |
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||||||| || |||| ||||| ||||||||| |||| ||||||||||||||||||| |||||||||||| || | |||||||||||||||||| ||||| |
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| T |
11850851 |
aggctcccttgcacaacattggcttgccaatcctgccatagtcctgaaactctccaggccttcctcgtctatgtccattgctggatcaatgaccttttcg |
11850752 |
T |
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| Q |
151 |
aatga |
155 |
Q |
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||||| |
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| T |
11850751 |
aatga |
11850747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 11855642 - 11855769
Alignment:
| Q |
22 |
actacgtatcgcatgtcgcgatgcttattaggctccttttcacagcattgtcttgccaattctgcaatagtcctgaaactctccaagccttcctcgtcca |
121 |
Q |
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|||||||||| ||| ||| || ||| || ||||||| || ||||||| || ||||||||||||| ||| ||||||||||||||||||||||||||| | |
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| T |
11855642 |
actacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcctcgttga |
11855741 |
T |
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| Q |
122 |
ttttcattgctggatcaatgacattttc |
149 |
Q |
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| | |||||||||||||||||| ||||| |
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| T |
11855742 |
tgtccattgctggatcaatgaccttttc |
11855769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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