View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7819_low_7 (Length: 309)
Name: NF7819_low_7
Description: NF7819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7819_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 133 - 294
Target Start/End: Original strand, 18092696 - 18092857
Alignment:
| Q |
133 |
aaaaataatctatgtttaaacttaataattgtttcatgactgtttatttattgattttgtttgttgtcaacacaataaagtcgttataatagtaactttg |
232 |
Q |
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| T |
18092696 |
aaaaataatctatgtttaaacttaataattgtttcatgactgtttatttattgattttgtttgttgtcaacacaataaagtcgttataatagtaactttg |
18092795 |
T |
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| Q |
233 |
cttaattgaacgtcaagtgttgtaacatcccaacttttgcagcttcaaagattttcacttat |
294 |
Q |
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| T |
18092796 |
cttaattgaacgtcaagtgttgtaacatcccaacttttgcagcttgaaagattttcacttat |
18092857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 18092550 - 18092679
Alignment:
| Q |
20 |
tctggagacactgtcttattcataagagtatcaagatgaactaaaaaggagccaacgggtcccctgtttcaaaccccttctaatatctacttgttggtgt |
119 |
Q |
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| T |
18092550 |
tctggagacactgtcttattcataagagtatcaagatgaactaaaaaggagccaacgggtcctctgtttcaaaccccttctaatatctacttgttggtgt |
18092649 |
T |
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| Q |
120 |
aagctttaaaggcaaaaataatctatgttt |
149 |
Q |
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| T |
18092650 |
aagctttaaaggcaaaaataatctatgttt |
18092679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 18072806 - 18072856
Alignment:
| Q |
24 |
gagacactgtcttattcataagagtatcaagatgaactaaaaaggagccaa |
74 |
Q |
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| T |
18072806 |
gagacattgtcttattcataagagtatcaagatgaactaaaaaggggccaa |
18072856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 27423268 - 27423318
Alignment:
| Q |
24 |
gagacactgtcttattcataagagtatcaagatgaactaaaaaggagccaa |
74 |
Q |
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| T |
27423268 |
gagacattgtcttatacataagagtagcaagatgaactaaaaaggggccaa |
27423318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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