View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7820_high_2 (Length: 610)
Name: NF7820_high_2
Description: NF7820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7820_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Original strand, 44739658 - 44740255
Alignment:
| Q |
1 |
tagtcatgggtatctagacatccacaagagaaaaattgtacagtaattgtacattttattgtatatctaatgattaaaaaacaaatagatgataagcaaa |
100 |
Q |
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| T |
44739658 |
tagtcctgggtatctagacatccacaagagaaaaattgtacagtaattgtacattttattgtatatctaatgattaaaaaacaaacagatgataagcaaa |
44739757 |
T |
|
| Q |
101 |
tctaaagaacattacaaaatttaccttcaatgcagcagccccaaatgcaaaccaaccatctggaaacatagagttcattgacatcgcagactcccttaaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44739758 |
tctaaagaacattacacaatttaccttcaatgcagcagccccaaatgcaaaccaaccatctggaaacatagagttcattgacatcgcagactcccttaaa |
44739857 |
T |
|
| Q |
201 |
ttaacaaacaaaatttactgtagttaacatatcaaaccaaatagcaatgttacaatcaaaacaacagacatttttaacataatgatgacaaagaaaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44739858 |
ttaacaaacaaaatttactgtagttaacatatcaaaccaaatagcaatgttacaatcaaaacaacagacatttttaacataatgatgacaaagaaaatga |
44739957 |
T |
|
| Q |
301 |
tgaaactgaaacgcttcattcaggaccaacatggctcaccataaaactttagatgtctcatattctcctctattgtatgcactgcgggccagagagcgct |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44739958 |
tgaaactgaaacgcttcattcaggaccaacatagctcaccataaaactttagatgtctcatattctcctctattgtatgcactgcgggccagagagcgct |
44740057 |
T |
|
| Q |
401 |
gtgaaccagagaaaatgtaatttgtttaaaaaatgttaatttaaattttttataatatgacagaagcaaagtacattagattaagcatataataggcaca |
500 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44740058 |
gtgaaccagagaaaatgtaatttgtttaaaaaatgttgatttaaattttttataatatgacagaagcaaagtacattagattaagcatataataggcaca |
44740157 |
T |
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| Q |
501 |
ccttagctctagcagacctattgttggaaacttccagagctttttcatagcatgcatcattattggtaatgtcacccaaggagcacctagaataatat |
598 |
Q |
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| T |
44740158 |
ccttagctctagcagacctattgttggaaacttccagagctttttcatagcatgcatcattattggtaatgtcacccaaggagcacctagaataatat |
44740255 |
T |
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