View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7820_high_3 (Length: 505)
Name: NF7820_high_3
Description: NF7820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7820_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 1702315 - 1702814
Alignment:
| Q |
1 |
aatcttggagtctttggatatctgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctatt |
100 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1702315 |
aatcttcgagtctttggatgtctgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctact |
1702414 |
T |
|
| Q |
101 |
ctacacaacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactctttcaatttt-att |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
1702415 |
ctacacaacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactctttccatttttatt |
1702514 |
T |
|
| Q |
200 |
gaatctttatgcctcgtccacgtcttctattttaaattcaaactcaaacactaacaagcactttccttctcatcatcctcttattattcaacaccttagc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
1702515 |
gaatctttatgcctcgtccacgtcttctattttaaattcaaactcaaacactagcaaacactttccttctcatcatcctcttattattcaacaccttaac |
1702614 |
T |
|
| Q |
300 |
catcctattattccttcaccttctcctcaaaattcaaactcatcacttatccctacacttcttatctccctcactacacgtactccaactttatctcctc |
399 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1702615 |
catcctattattcctccaccttctcctcaaaattcaaactcatcacttatccctacacctcttatctcccccactacacgtactccaactttatctcctc |
1702714 |
T |
|
| Q |
400 |
aaatttctcaagttcccactaactcttccacgagatcacttactggaactgcatcatcaacaccacacccgtcaccgaaatcttctcgcatagttacaag |
499 |
Q |
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| T |
1702715 |
aaatttctcaagttcccactaactcttccacgagatcacttactggaactgcatcatcaacaccgcacccgtctccggaatcttctcgcatagttacaag |
1702814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 26592018 - 26591960
Alignment:
| Q |
106 |
caacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagaca |
164 |
Q |
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|||||||||||||||||||| || || || ||||||||||| || |||||||| ||||| |
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| T |
26592018 |
caacatcatgcctaccaatgctaccatcctcccactcaaaaattatatctctccagaca |
26591960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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