View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7820_high_6 (Length: 391)
Name: NF7820_high_6
Description: NF7820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7820_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 46 - 378
Target Start/End: Complemental strand, 6313694 - 6313362
Alignment:
| Q |
46 |
ctttattcacaagattcgaattcaagacctttctcaacatatacgagtcatgttaccgagtgtctttaagacgctgactaatgttgatcttttaagttat |
145 |
Q |
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| T |
6313694 |
ctttattcacaagactcgaattcaacacctttctcaacatatacgagtcatgttaccgagtgtctttaagacactgactaatgtcgatcttttaagttat |
6313595 |
T |
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| Q |
146 |
ttcaattattgagaccattcgatcaattcaaagactaacatcaaacttaatcaagttgtaaatcgtagagaatctaagtctctcgattatttttctcttt |
245 |
Q |
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| T |
6313594 |
ttcaattattgagaccattcgatcaattcaaagactaacatcaaacttaatcaagttgcaaatcgtagagaatctgagtctctcgattatttttctcttt |
6313495 |
T |
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| Q |
246 |
ttaaatgtggtgttgacactagtgtcactaaactttttagtaccaaaaaagaaacattcccacatgtatttaatttttgaagtgggggtctgttttcaat |
345 |
Q |
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| T |
6313494 |
ttaaatgtggtgttgacactagtgtcactaaactttttagtaccaaagaagaaacattcccacatgtatttaatttttgaagtgggggtctgttttcaat |
6313395 |
T |
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| Q |
346 |
atgaaacattctaacttggttatgtcgtgtgtg |
378 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
6313394 |
atgaaacattctaacttggttatgtcatgtgtg |
6313362 |
T |
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