View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7820_low_3 (Length: 530)
Name: NF7820_low_3
Description: NF7820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7820_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 53 - 516
Target Start/End: Original strand, 3605498 - 3605958
Alignment:
| Q |
53 |
gatgaaattgtgaataaactcatagcattcaggtttacagcaaaataagcataatgcatacaattgtgacaaaatacaggtgtctggaatatctagcata |
152 |
Q |
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| T |
3605498 |
gatgaaattgtgaataaactcatagcattcaagtttacagcaaaataagcataatgcatacaattgtgacaaaatacaggtg-ctggaatatccagcata |
3605596 |
T |
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| Q |
153 |
tggatggatctaacgttgaagacacaaaagtcattctttgaatttttaatagacaccaaaagaagaaaatccgccaatgaccctattgaataccgcaata |
252 |
Q |
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| T |
3605597 |
tggatggatctgacgttgaagacgcaaaaatcattctttgaatttttaatagacatcaaatgaagaaaatccgccaatgaccttattgaataccgcaata |
3605696 |
T |
|
| Q |
253 |
agacgagaaatcaaattatcgaaccaaaaagacgaagaacacaacatcgtcgcatttacacgacaaaacacaagaaaagccaaatctttgtgaaagaatg |
352 |
Q |
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| T |
3605697 |
aaacgagaaatcaaattatcgaaccaagaagacgaacaacgcaacatcgtcacatttacacgacaaaacacaagaaaagccaaatctttgtgaaagaatg |
3605796 |
T |
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| Q |
353 |
tttgacaaaggtaactgataaatcctccttccatacatatcccaaagaatgtttgacaaaaataaccgataaattagttgaagaaaattgttccataggg |
452 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3605797 |
tttgacaaagataactgataaatcctccttccatacatatcctaaagaatgtttgacaaaaataaccgat--attagttgaagaaaattgttccataggg |
3605894 |
T |
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| Q |
453 |
tggtggcaatctaaaccaagttgctacctagccatggtatcaccgcacccacctcagaaatatg |
516 |
Q |
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| T |
3605895 |
tggtggcaatctaaaccaagttgctacttagccatggtatcaccgcacccacctcagaaatatg |
3605958 |
T |
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