View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7820_low_5 (Length: 405)
Name: NF7820_low_5
Description: NF7820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7820_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 33126455 - 33126831
Alignment:
| Q |
16 |
aaaatttagaaagaatgcatgtattgtgtgtttggaaccgcattcagaagctagttcatatagcttctgaatcgcgaccagccacatgctactatttgta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
33126455 |
aaaatttagaaagaatgcatgtattgtgtgtttggaaccgcattcagaagctagttcatatagcttctgaatcgcagccaaccacatgctactatttgta |
33126554 |
T |
|
| Q |
116 |
gcttcaccaatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaacgtaaatccaaacatcgactatatatctaacaagaatgaataaa |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33126555 |
gctgcaccaatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaacgtaaatccaaacatcgactatacatctaacaagaatgaataaa |
33126654 |
T |
|
| Q |
216 |
cataagatagaaatatactaacacttagagagggctgtagaagactttggatcaaaaccaataatcaaagtgagcatagggataaaaattcctccacctc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33126655 |
cataagatagaaatatactaacacttagagagggctgtagaagactttggatcaaaaccaatgatcaaagtgagcatagggataaaaattcctccacctc |
33126754 |
T |
|
| Q |
316 |
ctacccctcctacacttcccaatgctgctccaaaaaatccgacaatagaccctacgacaattctccaaccaaacttc |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33126755 |
ctacccctcctacacttcccaatgctgctccaaaaaatccgacaatagaccctacgacaattctccaaccaaacttc |
33126831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 248 - 355
Target Start/End: Complemental strand, 7568728 - 7568621
Alignment:
| Q |
248 |
ggctgtagaagactttggatcaaaaccaataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttcccaatgctgctcca |
347 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||||| |||||||||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
7568728 |
ggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctccc |
7568629 |
T |
|
| Q |
348 |
aaaaatcc |
355 |
Q |
| |
|
|||||||| |
|
|
| T |
7568628 |
aaaaatcc |
7568621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 32663744 - 32663699
Alignment:
| Q |
147 |
tgagacgtgagaaagataattgaaacgtaaatccaaacatcgacta |
192 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||||||||||| ||||| |
|
|
| T |
32663744 |
tgagacgtgagaaagacaattcaaatgtaaatccaaacattgacta |
32663699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University