View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7821_low_1 (Length: 713)

Name: NF7821_low_1
Description: NF7821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7821_low_1
NF7821_low_1
[»] chr2 (12 HSPs)
chr2 (16-696)||(6718369-6719049)
chr2 (189-243)||(26202035-26202090)
chr2 (189-242)||(40682403-40682456)
chr2 (189-221)||(43511115-43511147)
chr2 (189-243)||(35379024-35379079)
chr2 (189-230)||(7928307-7928349)
chr2 (192-241)||(16398123-16398173)
chr2 (191-244)||(33319822-33319876)
chr2 (184-213)||(2091037-2091066)
chr2 (189-241)||(7035575-7035628)
chr2 (183-216)||(21828283-21828316)
chr2 (189-245)||(26626878-26626935)
[»] chr1 (18 HSPs)
chr1 (189-251)||(27820345-27820408)
chr1 (189-245)||(45975695-45975752)
chr1 (189-251)||(2777891-2777954)
chr1 (189-251)||(7137006-7137069)
chr1 (189-251)||(34290235-34290298)
chr1 (190-250)||(35179139-35179200)
chr1 (190-237)||(28689461-28689509)
chr1 (189-243)||(38503473-38503528)
chr1 (189-243)||(42174862-42174917)
chr1 (189-243)||(51695503-51695558)
chr1 (189-250)||(5887002-5887064)
chr1 (189-219)||(6292525-6292555)
chr1 (189-219)||(31517748-31517778)
chr1 (189-219)||(37593692-37593722)
chr1 (191-244)||(41195203-41195257)
chr1 (191-243)||(12564509-12564562)
chr1 (190-250)||(27140478-27140539)
chr1 (193-245)||(37631571-37631624)
[»] chr5 (13 HSPs)
chr5 (189-245)||(4014432-4014489)
chr5 (189-251)||(7984968-7985031)
chr5 (189-250)||(34160731-34160793)
chr5 (189-245)||(9202756-9202813)
chr5 (189-244)||(39105470-39105526)
chr5 (190-244)||(7319017-7319072)
chr5 (189-219)||(17258891-17258921)
chr5 (189-254)||(28413292-28413358)
chr5 (192-245)||(39594812-39594866)
chr5 (189-250)||(42582912-42582974)
chr5 (191-251)||(12425570-12425631)
chr5 (189-237)||(31071252-31071301)
chr5 (183-216)||(32372926-32372959)
[»] chr8 (11 HSPs)
chr8 (191-243)||(43504758-43504811)
chr8 (189-244)||(20672756-20672812)
chr8 (189-251)||(27028830-27028893)
chr8 (196-250)||(36338277-36338332)
chr8 (194-254)||(14247237-14247298)
chr8 (199-250)||(5069697-5069749)
chr8 (189-250)||(1930035-1930097)
chr8 (189-250)||(30251462-30251524)
chr8 (189-250)||(43717945-43718007)
chr8 (197-237)||(3536961-3537002)
chr8 (190-219)||(31862525-31862554)
[»] chr3 (18 HSPs)
chr3 (193-243)||(21367674-21367725)
chr3 (199-247)||(3845580-3845629)
chr3 (189-253)||(33883758-33883823)
chr3 (191-251)||(44747418-44747479)
chr3 (190-244)||(2719474-2719529)
chr3 (189-243)||(24085346-24085401)
chr3 (189-251)||(28622007-28622070)
chr3 (193-251)||(30443892-30443951)
chr3 (189-251)||(30573922-30573985)
chr3 (189-243)||(39980736-39980791)
chr3 (189-243)||(40665436-40665491)
chr3 (189-250)||(402550-402612)
chr3 (190-243)||(901931-901985)
chr3 (189-250)||(20669172-20669234)
chr3 (189-230)||(46031010-46031052)
chr3 (194-251)||(50600191-50600249)
chr3 (190-242)||(25185993-25186046)
chr3 (189-241)||(45541580-45541633)
[»] chr6 (5 HSPs)
chr6 (190-243)||(27894053-27894107)
chr6 (197-251)||(835265-835320)
chr6 (189-251)||(2735068-2735131)
chr6 (189-251)||(31624089-31624152)
chr6 (189-243)||(34430469-34430524)
[»] chr7 (7 HSPs)
chr7 (189-256)||(47559609-47559677)
chr7 (189-239)||(30181223-30181274)
chr7 (189-251)||(40688994-40689057)
chr7 (193-251)||(46280284-46280343)
chr7 (189-245)||(529380-529437)
chr7 (189-253)||(5947181-5947246)
chr7 (189-218)||(6552300-6552329)
[»] chr4 (5 HSPs)
chr4 (189-243)||(17822873-17822928)
chr4 (189-243)||(55414428-55414483)
chr4 (196-245)||(50004159-50004209)
chr4 (189-245)||(52746848-52746905)
chr4 (192-252)||(55302247-55302308)
[»] scaffold0221 (1 HSPs)
scaffold0221 (192-252)||(22229-22290)


Alignment Details
Target: chr2 (Bit Score: 673; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 16 - 696
Target Start/End: Original strand, 6718369 - 6719049
Alignment:
Q  16 atatcagagtttttgtgagagcttcaagtctaaattctctccattcatgaagtctacaatcacggtatgaattttagattactggactaattatatgagc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6718369 atatcagagtttttgtgagagcttcaagtctaaattctctccattcatgaagtctacaatcacggtatgaattttagattactggactaattttatgagc 6718468  T
Q  116 taacatccactttcacaactaatatttgcatgggcttgattcgattgacttatctgatgttaacaacttatggtcataagctgttttcagcttattttca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718469 taacatccactttcacaactaatatttgcatgggcttgattcgattgacttatctgatgttaacaacttatggtcataagctgttttcagcttattttca 6718568  T
Q  216 taagtttccaagatatcttataaaaacagcatatagtttgttatagtatacataagcaattatatgataaccacttatgctacgacaagttctgaatata 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718569 taagtttccaagatatcttataaaaacagcatatagtttgttatagtatacataagcaattatatgataaccacttatgctacgacaagttctgaatata 6718668  T
Q  316 gtatacatatagtttgtgatagttaagctttttaaccaaacaagttttgaatatggttgacaatttgtcatattgcattgcagggcatttcaatgggttt 415  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718669 gtatacatatagtttgttatagttaagctttttaaccaaacaagttttgaatatggttgacaatttgtcatattgcattgcagggcatttcaatgggttt 6718768  T
Q  416 aggaccagacggcaagcttcgatatccatctcatcacgagctaccgagtaatggtaaaactcaaggagttggggaattccaatgttatgatcaaaacatg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718769 aggaccagacggcaagcttcgatatccatctcatcacgagctaccgagtaatggtaaaactcaaggagttggggaattccaatgttatgatcaaaacatg 6718868  T
Q  516 ctaagtttactcaaacaacaagctgaatcatctggaaatcctttatgggggcttggcggtccccatgatgtgcctacctatgaccaatcaccatactcca 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718869 ctaagtttactcaaacaacaagctgaatcatctggaaatcctttatgggggcttggcggtccccatgatgtgcctacctatgaccaatcaccatactcca 6718968  T
Q  616 acagcttcttcaaggatggtggttcttgggagtcttcatatggggacttcttcctttcatggtattcttctcagctcatag 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718969 acagcttcttcaaggatggtggttcttgggagtcttcatatggggacttcttcctttcatggtattcttctcagctcatag 6719049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 26202090 - 26202035
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    ||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||    
T  26202090 tcataagcttttttcaacttattttcataagttctccaatatatcttataaaaaca 26202035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 40682403 - 40682456
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtttccaagatatcttataaaaac 242  Q
    ||||||| |||||||| ||||||||||||||||  ||||||||||||| |||||    
T  40682403 tcataagttgttttcaacttattttcataagttctcaagatatcttatgaaaac 40682456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 43511147 - 43511115
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt 221  Q
    |||||||||||||||||||||||||||||||||    
T  43511147 tcataagctgttttcagcttattttcataagtt 43511115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 35379024 - 35379079
Alignment:
Q  189 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaaca 243  Q
    ||||||| ||||||||||||||||||||||| | ||||||||| ||||| ||||||    
T  35379024 tcataagttgttttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 7928307 - 7928349
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagata 230  Q
    ||||||| ||||||||||||||||||||||||| |||||||||    
T  7928307 tcataagttgttttcagcttattttcataagttctccaagata 7928349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 16398173 - 16398123
Alignment:
Q  192 taagctgttttcagcttattttcataagtt-tccaagatatcttataaaaa 241  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||| ||||    
T  16398173 taagctgttttcagcttattttcataagttctccaacataacttatgaaaa 16398123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 33319822 - 33319876
Alignment:
Q  191 ataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 244  Q
    ||||||| ||||||||||||||||||||||| |||||||||  |||| |||||||    
T  33319822 ataagcttttttcagcttattttcataagttctccaagatagtttatgaaaacag 33319876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 2091037 - 2091066
Alignment:
Q  184 tatggtcataagctgttttcagcttatttt 213  Q
    ||||||||||||||||||||||||||||||    
T  2091037 tatggtcataagctgttttcagcttatttt 2091066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 7035575 - 7035628
Alignment:
Q  189 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaa 241  Q
    ||||||| ||||||| ||||||||||||||| |||||||||||  |||||||||    
T  7035575 tcataaggtgttttccgcttattttcataagttttccaagatagtttataaaaa 7035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 21828316 - 21828283
Alignment:
Q  183 ttatggtcataagctgttttcagcttattttcat 216  Q
    ||||| ||||||||||||||||||||||||||||    
T  21828316 ttatgttcataagctgttttcagcttattttcat 21828283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 26626935 - 26626878
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 245  Q
    |||||| |||||||||| ||||||||||||||| | ||||||| ||||| ||||||||    
T  26626935 tcataatctgttttcaggttattttcataagttctgcaagatagcttatgaaaacagc 26626878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 27820345 - 27820408
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    ||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  27820345 tcataagctattttcagcttattttcataaattctccaagatagcttataaaaacagcatatag 27820408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 45975752 - 45975695
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 245  Q
    |||||||||||||||||||||||||||||| || ||||||||| ||||| ||||||||    
T  45975752 tcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaacagc 45975695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 2777954 - 2777891
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    |||||||| |||||||||||||||||||||||| |||||| || ||||| |||||||| |||||    
T  2777954 tcataagccgttttcagcttattttcataagttctccaagttaacttattaaaacagcttatag 2777891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 7137006 - 7137069
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    ||||||| | ||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||    
T  7137006 tcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttatag 7137069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 34290298 - 34290235
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    ||||||| ||||||||||||||||||||||||| | ||||||| ||||| |||||||| |||||    
T  34290298 tcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatag 34290235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 35179200 - 35179139
Alignment:
Q  190 cataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 250  Q
    |||||||||||||||||||||||||||||||| ||||  ||| ||||| |||||||| ||||    
T  35179200 cataagctgttttcagcttattttcataagttctccataataacttatgaaaacagcttata 35179139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 28689461 - 28689509
Alignment:
Q  190 cataagctgttttcagcttattttcataag-tttccaagatatcttata 237  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  28689461 cataagttgttttcagcttattttcataagctttccaagatagcttata 28689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 38503473 - 38503528
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| || | |||||||    
T  38503473 tcataagttgttttcagcttattttcataagttctccaagatagctaacaaaaaca 38503528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 42174917 - 42174862
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    |||||||||||||| | |||||||||||||||| ||||| ||| ||||||||||||    
T  42174917 tcataagctgtttttaacttattttcataagttctccaatataacttataaaaaca 42174862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 51695503 - 51695558
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    ||||||||| |||||||||||||||||||| || ||||||||| ||||| ||||||    
T  51695503 tcataagctattttcagcttattttcataaattctccaagatagcttatgaaaaca 51695558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 5887002 - 5887064
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 250  Q
    ||||||| |||||||||||||||||| |||||| ||||||||  |||||| ||||||| ||||    
T  5887002 tcataagttgttttcagcttattttcgtaagttctccaagatggcttatagaaacagcttata 5887064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 6292555 - 6292525
Alignment:
Q  189 tcataagctgttttcagcttattttcataag 219  Q
    |||||||||||||||||||||||||||||||    
T  6292555 tcataagctgttttcagcttattttcataag 6292525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 219
Target Start/End: Original strand, 31517748 - 31517778
Alignment:
Q  189 tcataagctgttttcagcttattttcataag 219  Q
    |||||||||||||||||||||||||||||||    
T  31517748 tcataagctgttttcagcttattttcataag 31517778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 219
Target Start/End: Original strand, 37593692 - 37593722
Alignment:
Q  189 tcataagctgttttcagcttattttcataag 219  Q
    |||||||||||||||||||||||||||||||    
T  37593692 tcataagctgttttcagcttattttcataag 37593722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 41195203 - 41195257
Alignment:
Q  191 ataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 244  Q
    ||||||| ||||||||||||||||||||||| |||||||||  |||| |||||||    
T  41195203 ataagcttttttcagcttattttcataagttctccaagatagtttatgaaaacag 41195257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 12564509 - 12564562
Alignment:
Q  191 ataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    ||||| |||||||||||||||| |||||||| ||||||||| ||||| ||||||    
T  12564509 ataagttgttttcagcttatttccataagttctccaagatagcttatgaaaaca 12564562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 27140539 - 27140478
Alignment:
Q  190 cataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatata 250  Q
    |||||| |||||||||||||||| |||||| | |||| |||| |||||||||||||| ||||    
T  27140539 cataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 37631571 - 37631624
Alignment:
Q  193 aagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 245  Q
    ||||| ||||||||||||||||||||||| ||||| ||| |||| |||||||||    
T  37631571 aagcttttttcagcttattttcataagttctccaatatagcttacaaaaacagc 37631624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 4014432 - 4014489
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 245  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  4014432 tcataagctgttttcagcttattttcataagttctccaagatagcttatgaaaacagc 4014489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 7985031 - 7984968
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    |||||||||||||||||||||||||||||| || ||||||||| ||||| |||| ||| |||||    
T  7985031 tcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaaaagcttatag 7984968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 34160793 - 34160731
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 250  Q
    |||||| |||||||||||||||||||||||||| |||||||||||| || |||| ||| ||||    
T  34160793 tcataaactgttttcagcttattttcataagttctccaagatatctaatgaaaatagcttata 34160731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 9202756 - 9202813
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 245  Q
    ||||||||||||| ||||||||||||||||||| | ||||||| ||||| ||||||||    
T  9202756 tcataagctgtttccagcttattttcataagttcttcaagataacttatgaaaacagc 9202813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 39105526 - 39105470
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 244  Q
    ||||||||| |||| |||||||||||||||||| ||||||||| ||||| |||||||    
T  39105526 tcataagctatttttagcttattttcataagttctccaagatagcttatgaaaacag 39105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 7319017 - 7319072
Alignment:
Q  190 cataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 244  Q
    |||||| |||| |||||||||||||||||||| ||||||||| ||||| |||||||    
T  7319017 cataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacag 7319072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 219
Target Start/End: Original strand, 17258891 - 17258921
Alignment:
Q  189 tcataagctgttttcagcttattttcataag 219  Q
    |||||||||||||||||||||||||||||||    
T  17258891 tcataagctgttttcagcttattttcataag 17258921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 28413292 - 28413358
Alignment:
Q  189 tcataagctgttttcagcttattttcat-aagtttccaagatatcttataaaaacagcatatagttt 254  Q
    |||||||||||||||||||||||| ||| || | ||||||||| ||||| || ||||| ||||||||    
T  28413292 tcataagctgttttcagcttatttccataaactctccaagataacttatgaacacagcgtatagttt 28413358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 39594866 - 39594812
Alignment:
Q  192 taagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 245  Q
    |||| |||||||||||||||||||||||||   ||||||||||||| ||||||||    
T  39594866 taagttgttttcagcttattttcataagttcaacaagatatcttatgaaaacagc 39594812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 42582974 - 42582912
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 250  Q
    |||||| ||||||| |||||||||||||||||| ||||| ||| |||| ||||||||| ||||    
T  42582974 tcataaactgttttgagcttattttcataagttctccaatatagcttacaaaaacagcttata 42582912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 12425631 - 12425570
Alignment:
Q  191 ataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    ||||| |||||||| |||||||||||||||| ||||||||| ||| | |||||||| |||||    
T  12425631 ataagttgttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatag 12425570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 31071301 - 31071252
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttata 237  Q
    |||||||||||||||||||||||| ||||| || |||||||||| |||||    
T  31071301 tcataagctgttttcagcttatttgcataaattctccaagatatgttata 31071252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 32372959 - 32372926
Alignment:
Q  183 ttatggtcataagctgttttcagcttattttcat 216  Q
    ||||| ||||||||||||||||||||||||||||    
T  32372959 ttatgttcataagctgttttcagcttattttcat 32372926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 43504811 - 43504758
Alignment:
Q  191 ataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  43504811 ataagctgttttcagcttatttccataagttctccaagatagcttataaaaaca 43504758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 20672812 - 20672756
Alignment:
Q  189 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacag 244  Q
    ||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||    
T  20672812 tcataagctgttttcagcttattttcataagctctccaggatagcttataaaaacag 20672756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 27028893 - 27028830
Alignment:
Q  189 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatag 251  Q
    ||||||||| ||||||||||||||||||||| | ||||||||| ||||| |||||||| |||||    
T  27028893 tcataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttatag 27028830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 36338277 - 36338332
Alignment:
Q  196 ctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 250  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||||| ||||    
T  36338277 ctgttttcagcttattttcataagttctcaaagatattttataaaaacagcttata 36338332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 14247237 - 14247298
Alignment:
Q  194 agctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatagttt 254  Q
    |||||||||||||||||||||||||||| || | |||||||||  |||||||| ||||||||    
T  14247237 agctgttttcagcttattttcataagttctctacgatatcttacgaaaacagcttatagttt 14247298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 5069749 - 5069697
Alignment:
Q  199 ttttcagcttattttcataag-tttccaagatatcttataaaaacagcatata 250  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||||| ||||    
T  5069749 ttttcagcttattttcataagctttcgaagatatcttatgaaaacagcttata 5069697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 1930097 - 1930035
Alignment:
Q  189 tcataagctgttttcagcttattttcataa-gtttccaagatatcttataaaaacagcatata 250  Q
    ||||||||||||||||||||||||||| || ||  |||||||| ||||| |||||||| ||||    
T  1930097 tcataagctgttttcagcttattttcacaaggtcaccaagatagcttatgaaaacagcttata 1930035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 30251462 - 30251524
Alignment:
Q  189 tcataagctgttttcagcttattttcataagt-ttccaagatatcttataaaaacagcatata 250  Q
    ||||||||| ||| ||||||||||||||||||  ||||||||| ||||| |||||||| ||||    
T  30251462 tcataagctttttacagcttattttcataagtggtccaagatagcttatgaaaacagcttata 30251524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 43717945 - 43718007
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 250  Q
    |||||||||||||| |||||| ||||||||||| ||||||||| |||||  ||||||| ||||    
T  43717945 tcataagctgtttttagcttactttcataagttctccaagatagcttatgcaaacagcttata 43718007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 3536961 - 3537002
Alignment:
Q  197 tgttttcagcttattttcataagtt-tccaagatatcttata 237  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  3536961 tgttttcagcttatttccataagttctccaagatatcttata 3537002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 219
Target Start/End: Complemental strand, 31862554 - 31862525
Alignment:
Q  190 cataagctgttttcagcttattttcataag 219  Q
    ||||||||||||||||||||||||||||||    
T  31862554 cataagctgttttcagcttattttcataag 31862525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 21367725 - 21367674
Alignment:
Q  193 aagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  21367725 aagctgttttcagcttattttcataagttctccaagatagcttatgaaaaca 21367674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 3845580 - 3845629
Alignment:
Q  199 ttttcagcttattttcataagtt-tccaagatatcttataaaaacagcat 247  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  3845580 ttttcagcttattttcataagttctccaagataacttatgaaaacagcat 3845629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 33883758 - 33883823
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatagtt 253  Q
    ||||||| ||||||||||||||||||||||||| || |||||| |||||  ||||| |||||||||    
T  33883758 tcataagttgttttcagcttattttcataagttctctaagatagcttatgtaaacaacatatagtt 33883823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 44747418 - 44747479
Alignment:
Q  191 ataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatag 251  Q
    |||||||  |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||    
T  44747418 ataagcttctttcagcttattttcataagttttccaagatagcttatgaaaacagcttatag 44747479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 2719529 - 2719474
Alignment:
Q  190 cataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 244  Q
    |||||| |||| |||||||||||||||||||| ||||||||| ||||| |||||||    
T  2719529 cataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacag 2719474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 24085346 - 24085401
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||| |||| |||||||    
T  24085346 tcatacgctgttttcagcttattttcacaagttctccaagatagcttacaaaaaca 24085401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 28622007 - 28622070
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    ||||||||||||||||| ||||||||||||||| || ||||||  |||| |||||||| |||||    
T  28622007 tcataagctgttttcaggttattttcataagttctcgaagatagtttatgaaaacagcttatag 28622070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 30443951 - 30443892
Alignment:
Q  193 aagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    ||||| ||||||||||||||||||||||| ||||| |||  ||||||||||||| |||||    
T  30443951 aagcttttttcagcttattttcataagttctccaatatagtttataaaaacagcttatag 30443892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 30573922 - 30573985
Alignment:
Q  189 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatag 251  Q
    |||||||||||||||||||||| ||||| || | ||||||||| ||||| |||||| |||||||    
T  30573922 tcataagctgttttcagcttatgttcatcagctctccaagatagcttatgaaaacatcatatag 30573985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 39980791 - 39980736
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    ||||||||| |||||| |||||||||||||||| ||||| ||| ||||||||||||    
T  39980791 tcataagcttttttcaacttattttcataagttctccaatatagcttataaaaaca 39980736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 40665491 - 40665436
Alignment:
Q  189 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaaca 243  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| ||||| ||||||    
T  40665491 tcataagctgttttcagcttatttttataagctctccaagataacttatgaaaaca 40665436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 402550 - 402612
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 250  Q
    ||||||||||||||||||||| ||||| ||||| | |||||||  ||||||||||||| ||||    
T  402550 tcataagctgttttcagcttaatttcacaagttcttcaagatagattataaaaacagcttata 402612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 901985 - 901931
Alignment:
Q  190 cataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    |||||||| |||||| |||||||||||||||| ||||| ||| ||||||||||||    
T  901985 cataagcttttttcaacttattttcataagttctccaatatagcttataaaaaca 901931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 20669234 - 20669172
Alignment:
Q  189 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatata 250  Q
    ||||||||||||||| |||||||| |||||| | ||||||||| ||||| |||||||| ||||    
T  20669234 tcataagctgttttccgcttatttacataagctctccaagatagcttatgaaaacagcttata 20669172  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 46031052 - 46031010
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagata 230  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  46031052 tcataagctgttttcagcttattttaataagttctccaagata 46031010  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 50600191 - 50600249
Alignment:
Q  194 agctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    |||||||||||||||||||||||||||| ||||| ||| || || |||||||| |||||    
T  50600191 agctgttttcagcttattttcataagttctccaatatagctgatgaaaacagcttatag 50600249  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 25186046 - 25185993
Alignment:
Q  190 cataagctgttttcagcttattttcataag-tttccaagatatcttataaaaac 242  Q
    |||||| |||||||| |||||||||| ||| ||||||||||| |||||||||||    
T  25186046 cataagttgttttcatcttattttcacaagatttccaagatagcttataaaaac 25185993  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 45541633 - 45541580
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaa 241  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||| ||||| ||||    
T  45541633 tcataagctgttttcaggttattctcataagttatccaagatagcttatgaaaa 45541580  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 27894107 - 27894053
Alignment:
Q  190 cataagctgttttcagcttattttcataag-tttccaagatatcttataaaaaca 243  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  27894107 cataaactgttttcagcttattttcataagcttttcaagatatcttatgaaaaca 27894053  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 835265 - 835320
Alignment:
Q  197 tgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||| || |||||    
T  835265 tgttttcagcttattttcataagttctccaagatagcttatgaaaactgcttatag 835320  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 2735131 - 2735068
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    ||||||||||||||| ||||||||||||||||| | ||||||  ||||| |||||||| |||||    
T  2735131 tcataagctgttttcggcttattttcataagttgttcaagattgcttatgaaaacagcttatag 2735068  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 31624152 - 31624089
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    |||||||||||||||| ||||||||||||| || ||||||||| | ||| |||||||| |||||    
T  31624152 tcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatag 31624089  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 34430469 - 34430524
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    ||||||||| |||||||||||||||||||| || ||||||||| ||||| ||||||    
T  34430469 tcataagcttttttcagcttattttcataacttctccaagatagcttatgaaaaca 34430524  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 47559609 - 47559677
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatagtttgt 256  Q
    ||||||| ||||||| ||| ||||||||||||| ||||| ||| ||||| |||||||| ||||||||||    
T  47559609 tcataagttgttttcggctcattttcataagttctccaaaataacttatgaaaacagcttatagtttgt 47559677  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 30181274 - 30181223
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaa 239  Q
    ||||||||| || |||||||||||||| ||||| ||||||||||||||||||    
T  30181274 tcataagctattatcagcttattttcaaaagttctccaagatatcttataaa 30181223  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 40688994 - 40689057
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    |||||||||||||| |||||||||||||||||| |||| |||| ||||| || ||||| |||||    
T  40688994 tcataagctgttttgagcttattttcataagttatccaggatagcttatgaacacagcttatag 40689057  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 46280284 - 46280343
Alignment:
Q  193 aagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 251  Q
    ||||| |||||||| |||||||||||||| ||||| ||| |||||||||||||| |||||    
T  46280284 aagcttttttcagcctattttcataagttctccaatatagcttataaaaacagcttatag 46280343  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 529437 - 529380
Alignment:
Q  189 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagc 245  Q
    |||||||||||||||| | |||||||||||| | ||||||||| ||||| ||||||||    
T  529437 tcataagctgttttcaacatattttcataagctctccaagatagcttatgaaaacagc 529380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 5947246 - 5947181
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatagtt 253  Q
    ||||||||| |||||||||||||||||||| || ||| ||||| ||||| || ||||| |||||||    
T  5947246 tcataagctcttttcagcttattttcataacttctcctagatagcttatgaatacagcttatagtt 5947181  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 6552300 - 6552329
Alignment:
Q  189 tcataagctgttttcagcttattttcataa 218  Q
    ||||||||||||||||||||||||||||||    
T  6552300 tcataagctgttttcagcttattttcataa 6552329  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 17822873 - 17822928
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    ||||||||| |||| |||||||||||||||||| ||||||||| ||||| ||||||    
T  17822873 tcataagctttttttagcttattttcataagttctccaagatagcttatgaaaaca 17822928  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 55414428 - 55414483
Alignment:
Q  189 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 243  Q
    ||||||||| |||||| |||||||||||||||| ||||||||| ||||| ||||||    
T  55414428 tcataagcttttttcaacttattttcataagttctccaagataacttatgaaaaca 55414483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 50004159 - 50004209
Alignment:
Q  196 ctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 245  Q
    |||||||||||||||||||||||||| ||||||||| ||||  ||||||||    
T  50004159 ctgttttcagcttattttcataagttctccaagataacttaggaaaacagc 50004209  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 52746848 - 52746905
Alignment:
Q  189 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagc 245  Q
    ||||||||||||||||||| |||||||||||  || ||||||| ||||| ||||||||    
T  52746848 tcataagctgttttcagctgattttcataagccttacaagatagcttatgaaaacagc 52746905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 55302308 - 55302247
Alignment:
Q  192 taagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatagt 252  Q
    |||||| ||||||||||||||||||||| ||||||| ||| ||||| | |||||| ||||||    
T  55302308 taagcttttttcagcttattttcataagttttccaacatagcttatgataacagcttatagt 55302247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 22290 - 22229
Alignment:
Q  192 taagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatagt 252  Q
    |||||| ||||||||||||||||||||| ||||||| ||| ||||| | |||||| ||||||    
T  22290 taagcttttttcagcttattttcataagttttccaacatagcttatgataacagcttatagt 22229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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