View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7821_low_2 (Length: 393)
Name: NF7821_low_2
Description: NF7821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7821_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 19805395 - 19805031
Alignment:
| Q |
20 |
ggagtgagtagcataacgggcgccacctcttggaaagaacactggttttgaaagcttgtttgaacggaagaaaggagagtatgtgagttagtatctcgtc |
119 |
Q |
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| T |
19805395 |
ggagtgagtagcataacgggcgccacctcttggaaagaacactggttttgaaagcttgtttgaacggaagaaaggagagtatgtgagttagtatctcgtc |
19805296 |
T |
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| Q |
120 |
agggaagttgttgatactcactaccatcgtcgtcgccgattgtgactgtgaaggaggcattattttcctcctcttattacttatttcgttatccattgat |
219 |
Q |
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| T |
19805295 |
agggaagttgttgatactcactaccatcgtcgtcgccgattgtgactgtgaaggaggcattattttcctcctcttattacttatttcgttttccattgat |
19805196 |
T |
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| Q |
220 |
tgaatgaatggattcttcagataacaaaagaaatctactgattaggcgatgatgttgtgtgtgggaaaattggttgacattgacgatgctgtgaagaaag |
319 |
Q |
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| T |
19805195 |
tgaatgaatggattcttcagataacaaaagaaatctactgattaggcgatgatgttgtgtgtgggaaaattggttgagattgacgatgctgtgaagaaag |
19805096 |
T |
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| Q |
320 |
gttttattag-nnnnnnnntaaaataaggttgtttttggcgatgttgacaaaaaccctatctctg |
383 |
Q |
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| T |
19805095 |
gttttattagaaaaaataataaaataaggttgtttttggcgatgttgacaaaaaccctatttctg |
19805031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 20110916 - 20110844
Alignment:
| Q |
62 |
tggttttgaaagcttgtttgaacggaagaaaggagagtatgtgagttagtatctcgtcagggaagttgttgat |
134 |
Q |
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| T |
20110916 |
tggttttgaaagcgtctttgaatggaagaaaagagacgatgtgagttagtatatcgtctgggaagtcgttgat |
20110844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 19970550 - 19970664
Alignment:
| Q |
20 |
ggagtgagtagcataacgggcgccacctcttggaaagaacactggttttgaaagcttgtttgaacggaagaaaggagagtatgtgagttagtatctcgtc |
119 |
Q |
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||||||||||||| || | | |||| |||||||||| || ||||| ||||||| | | ||| |||||||| ||||| |||||||||||||| ||||| |
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| T |
19970550 |
ggagtgagtagcacaatgagacccacgtcttggaaagcacggtggttctgaaagcgtctctgattggaagaaaagagagaatgtgagttagtatatcgtc |
19970649 |
T |
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| Q |
120 |
agggaagttgttgat |
134 |
Q |
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| T |
19970650 |
tgggaagtcgttgat |
19970664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 17382881 - 17382801
Alignment:
| Q |
52 |
gaaagaacactggttttgaaagcttgtttgaacggaagaaaggagagtatgtgagttagtatctcgtcagggaagttgttga |
133 |
Q |
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||||||||| ||||| | ||||| |||||| | |||||||| ||||| |||||||||||||| || || ||||||||||||| |
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| T |
17382881 |
gaaagaaca-tggttctaaaagcgtgtttgcatggaagaaaagagagaatgtgagttagtatatcatcggggaagttgttga |
17382801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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