View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7821_low_3 (Length: 366)
Name: NF7821_low_3
Description: NF7821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7821_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 3856033 - 3855663
Alignment:
| Q |
9 |
cattattcttcaaatgaccaacaagtaataacacactacccgtggctgccaagttacgtacataacaaaatcattgaattgaacaaattgat----cttt |
104 |
Q |
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| T |
3856033 |
cattattcttcaaatgaccaacaagtaataacacactacccgtggctgccaagttacgtacataacaaaatcattgaattgaacaaattgattgatcttt |
3855934 |
T |
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| Q |
105 |
atggctatgcta---------tgtgtcacaacatagagagacatcgcattaagttatatactttcgtagcaccttccaaactatatatgcgtccaattca |
195 |
Q |
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| T |
3855933 |
atggctatgctaataatgctatgtgtcacaacatagagagacatcacattaagttatatactttcgtagcaccttccaaactatatatgcgtccaattca |
3855834 |
T |
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| Q |
196 |
gtctattttcattttctaatttcaactatacgtatgcaatttttgttcaatgaatccacacattagggtgaaataagtcgattgagtttcattcaactta |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855833 |
gtctattttcattttctaatttcaactatacgtatgcaatttttgttcaatgaatccacacattagggtgaaataagtcgattgagtttcattcaactta |
3855734 |
T |
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| Q |
296 |
actttataatggttaattgtgttctaaacttgatctaagtttgactcaacaatcatgtatatttagtatac |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855733 |
actttataatggttaattgtgttctaaacttgatctaagtttgactcaacaatcatgtatatttagtatac |
3855663 |
T |
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