View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7821_low_4 (Length: 315)
Name: NF7821_low_4
Description: NF7821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7821_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 47628193 - 47628489
Alignment:
| Q |
1 |
ataaaaccttcaaaattgtatttgtagtgttaaatttggaaaaaagaccaaatggacagacgtttttcaatttaagggactagattgttatttcacaaat |
100 |
Q |
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| T |
47628193 |
ataaaaccttcaaaattgtatttgtagtgttaaatttggaaaaaagaccaaatggacagaagtttttcaatttaagggactagattgttatttcacaaat |
47628292 |
T |
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| Q |
101 |
ttaagggactaaactaatcaaccatcataatttcaaggactaaaatcatgatttactcctttcatatcaatccaaattccaaaagtcgccactatttgca |
200 |
Q |
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| T |
47628293 |
ttaagggactaaactaatcaaccatcataatttcaaggactaaaatcatgatttactcctttcatatcaatccaaattccaaaagtcgccactatttgca |
47628392 |
T |
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| Q |
201 |
gaatgtaacagaatcttttcttagttgtaagctctgaagcacagacacctctgacattaggcgtgtctcggtgtccaatgcgcgtcagtgtccgaca |
297 |
Q |
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| T |
47628393 |
gaatgtaacagaatcttttcttagttgtaagctctgaagcagagacacctctgacattaggcatgtctcggtgtccaatgcgcgtcagtgtccgaca |
47628489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 28026437 - 28026481
Alignment:
| Q |
232 |
ctctgaagcacagacacctctgacattaggcgtgtctcggtgtcc |
276 |
Q |
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| T |
28026437 |
ctctgaagcacggacacctctggcattaggcgtgtcttggtgtcc |
28026481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 38474798 - 38474875
Alignment:
| Q |
69 |
aatttaagggactagattgttatttcacaaatttaagggactaaactaatcaaccatcataatttcaaggactaaaat |
146 |
Q |
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| T |
38474798 |
aatttaagggactaaattgctatttctcaaattttagggactaaattgaccacccgttacaatttcaaggactaaaat |
38474875 |
T |
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