View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7821_low_9 (Length: 240)
Name: NF7821_low_9
Description: NF7821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7821_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 9064201 - 9064003
Alignment:
| Q |
35 |
tgtgcattaatatattcgtctctagagatatagtcacttcccttaaaataaaaaagatatagtcacttattcacaagtttttctagccaactcggggaaa |
134 |
Q |
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| T |
9064201 |
tgtgcattagtatattcgtctctagagatatagtcacttcccttaaaa---aaaagaca--gtcacttattcacaagtttttctagccaactcggggaaa |
9064107 |
T |
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| Q |
135 |
ccgatattcctctccatttcaga-tcttctttctttcatttgattatggatctaagcttattcttcgttgcgtttatcattacctagtcaatctttataa |
233 |
Q |
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| T |
9064106 |
ccgatattcctctccatttcagaatcttctttctttcatttgattatggatctaagctgattcttcgttgtctttatcattacctagtcaatcattataa |
9064007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 9076294 - 9076143
Alignment:
| Q |
42 |
taatatattcgtctctagagatatagtcacttcccttaaaataaaaaagatatagtcacttattcacaagtttttctagccaactcggggaaaccgatat |
141 |
Q |
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| T |
9076294 |
taatatattcacctctagagatataatcacttcctttaaaa---aaaagatatagtcacttattcacaagtttttctagccaactcggggaaaccaatat |
9076198 |
T |
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| Q |
142 |
tcctctccatttca-gatcttctttctttcatttgattatggatctaagcttatt |
195 |
Q |
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| T |
9076197 |
ctctctccattcaacaatcttctttctttcaattgattatggatctaagcttatt |
9076143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 9313583 - 9313651
Alignment:
| Q |
130 |
ggaaaccgatattcctctccatttcaga-tcttctttctttcatttgattatggatctaagcttattct |
197 |
Q |
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| T |
9313583 |
ggaaaccaatattcctctccatttcagaatcttcattctttcaattgattctggatccaagcttattct |
9313651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 9076090 - 9076043
Alignment:
| Q |
190 |
cttattcttcgttgcgtttatcattacctagtcaatctttataaccat |
237 |
Q |
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| T |
9076090 |
cttatccttcgttgtatttttcattacctagtcaatctttataaccat |
9076043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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