View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7822_high_8 (Length: 246)
Name: NF7822_high_8
Description: NF7822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7822_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 37935796 - 37935573
Alignment:
| Q |
17 |
acaattaaactcaata--aaacagttgatgataaacacaactaagagtagaatagtcaaactcaatatatagaacaatcaagatcttaaacattctaacc |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37935796 |
acaattaaactcaatataaaacagttgatgataaacacaactaagagtagaatagtcaaactcaatacatagaacaatcaagatcttaaacattctaacc |
37935697 |
T |
|
| Q |
115 |
caaattatgttcgacaattaaaactagaaaattgaagacattgaatagtcaaagcctcatttaaatccattagtgtcatattaatgacccttccaataat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37935696 |
caaattatgttcgacaattaaaactagaaaattgaagacattgaatagtcaaagcctcacttaaatccattagtgtcatattaatgacccttccaataat |
37935597 |
T |
|
| Q |
215 |
gagcatcttgtaaccagaataatc |
238 |
Q |
| |
|
||||||||| ||||||||| |||| |
|
|
| T |
37935596 |
gagcatcttataaccagaaaaatc |
37935573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University