View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7822_low_11 (Length: 203)
Name: NF7822_low_11
Description: NF7822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7822_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 34565098 - 34565269
Alignment:
| Q |
16 |
atgaatcaacccttaaatctttcaagcatggaattggacaatcaggtgacatttgtggcataacatttttcaaggctttcacatttcttattacgaggat |
115 |
Q |
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| T |
34565098 |
atgaatcaacccttaaatctttcaagcatggaattggacaatcaggtgacatttgtggcataacatttttcaaggctttcacatttcttattacgaggat |
34565197 |
T |
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| Q |
116 |
ttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagcctataccactaacttg |
187 |
Q |
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| T |
34565198 |
ttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagcctataccactaacttg |
34565269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 34553427 - 34553580
Alignment:
| Q |
16 |
atgaatcaacccttaaatctttcaagcatggaattggacaatcaggtgacatttgtggcataacatttttcaaggctttcacatttcttattacgaggat |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||| |
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| T |
34553427 |
atgaatcaacccttaaatctttcaagtatggaattggacaatcaggtgacatttgtggcataacatttttcaagcttttcacctttcttattgcaaggat |
34553526 |
T |
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| Q |
116 |
ttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgata |
169 |
Q |
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| T |
34553527 |
ttcacatttcttaatcaattgtgagaccatcaatatgctattaatagattgata |
34553580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 34290617 - 34290770
Alignment:
| Q |
16 |
atgaatcaacccttaaatctttcaagcatggaattggacaatcaggtgacatttgtggcataacatttttcaaggctttcacatttcttattacgaggat |
115 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| || ||||||||||||| |||||| ||||||||| | ||||| |
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| T |
34290617 |
atgaatcaacccttaaatctttcaagtatggaattggacaatcagctgacagttgtgtcagaacatttttcaagcttttcacctttcttattgcaaggat |
34290716 |
T |
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| Q |
116 |
ttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgata |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34290717 |
ttcacatttcttaatcaattgtgagatcatcaatatgctattaatagattgata |
34290770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 131369 - 131202
Alignment:
| Q |
16 |
atgaatcaacccttaaatctttcaagcatggaattggacaatcaggtgacatttgtggcataacatttttcaaggctttcacatttcttattacgaggat |
115 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||||| ||||||| ||||||||| ||||||| |
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| T |
131369 |
atgaatcaaccctcaaatctttcaagtatggaattggacaatcatgtgacaattgtctcataacatttttcaagtctttcacctttcttattgcgaggat |
131270 |
T |
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| Q |
116 |
ttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagcctataccactaa |
183 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||| |
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| T |
131269 |
ttcacatttcttaatcaattgtgagatcatcagtatgctattaatagattgatagtctatagcactaa |
131202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 15894847 - 15894959
Alignment:
| Q |
75 |
ataacatttttcaaggctttcacatttcttattacgaggatttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagccta |
174 |
Q |
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|||| |||||||||| ||||||| ||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||| |
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| T |
15894847 |
ataatatttttcaagtctttcactttttttattgcaaggatttcacatttcttaatcacttgtgagatcatcaatatgctatttatatattgataaccta |
15894946 |
T |
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| Q |
175 |
taccactaacttg |
187 |
Q |
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|| ||||||||| |
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| T |
15894947 |
tagaactaacttg |
15894959 |
T |
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