View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7822_low_2 (Length: 587)
Name: NF7822_low_2
Description: NF7822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7822_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Complemental strand, 6710375 - 6709806
Alignment:
| Q |
18 |
atacttccaaaacaagaaaaatcaacataaatagcaataagcacccttgaaagagaagaagacaacaaaaacaaacctaaatgggaaaagtaatatttat |
117 |
Q |
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| T |
6710375 |
atacttccaaatcaagaaaaatcaacataaatagcaataagcacccttgaaagagaagaagacaacaaaaacaaacctaaatgggaaaagtaatatttat |
6710276 |
T |
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| Q |
118 |
acaaggggaaaaattagaatagagagcgacatgaaccatccccttctcatgatctaaagactcacagccaacaacacaataaataactaaattatctctt |
217 |
Q |
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| T |
6710275 |
acaaggggaaaa-ttagaatagagagcgacatgaacgatccccttctcatgatccaaagactcacagccaacaacacaataaataactaaattatctctt |
6710177 |
T |
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| Q |
218 |
aaaaaactgaacgagtgacccactcaaacgtcttgtcaccttttaatgctctcaaggcgagtagccccacacaccaaataaaaggtcagcccaagaagca |
317 |
Q |
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| T |
6710176 |
aaaaaactgaacgagtgacccactcaaacgtcttgtcaccttttaatgctctcaaggcgagtagccccacacaccaaataaaaggccagcccaagaagca |
6710077 |
T |
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| Q |
318 |
tgatcaattggcacaatcattacgcataaaatctaaggctttctttgaaacgaaaagacgtgtctcgggaattcatgacctcctcacttggaggacattc |
417 |
Q |
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| T |
6710076 |
tgatcaattggcacaatcattacgcataaaatctaaagctttctttgaaacgaaaagacgtgtctcaggaattcacgacctcctcacttggaggacattc |
6709977 |
T |
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| Q |
418 |
cactaggatgaataaacacaaaagtggaacctcgttacac-----------------ccaatacatgggtttggaaaaacaactttttggactgagttgt |
500 |
Q |
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| T |
6709976 |
cactaggatgagtaaacacaaaagtggaacctcgttacacccaaacatgatcatcacccaatacacgggtttggaaaaacaactttttgaactgagtcgt |
6709877 |
T |
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| Q |
501 |
tgactttagaacattgtgaaccttaagtccttgcctcgaataacgagacaacaacttgaggctaatgttcc |
571 |
Q |
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| T |
6709876 |
tgactttagaacattgtgaaccttaagtccttgcctcgaataacgagacaacaacttgaggctaatgttcc |
6709806 |
T |
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