View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7822_low_3 (Length: 510)
Name: NF7822_low_3
Description: NF7822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7822_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Complemental strand, 47688545 - 47688054
Alignment:
| Q |
19 |
aatccgtatggagagaggcatagattaggcaaagcaaaagctaacattcatttgatgcaagttaattcaaatctcaccaaatagtttaccttaattaagc |
118 |
Q |
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| T |
47688545 |
aatccgtatggagagaggcatagattaggcaaagcaaaagctaacattcatttgatgcaagttaattcaaatctcaccaaatagtttaccttaattaagc |
47688446 |
T |
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| Q |
119 |
acaagataaacaaggattatctaattaagaagcagaattaagtttttcacctagctagctaattgatcttgattaatagttctcctagctaactaattaa |
218 |
Q |
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| T |
47688445 |
acaagataaacaaggattatctaattaagaagcagaattaagtttttcacctagctagctaattgatcttgattaatagttctcctagctaactaattaa |
47688346 |
T |
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| Q |
219 |
ctaattgatcataaaagttaaaatgcatccgaattggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcat |
318 |
Q |
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| T |
47688345 |
ctaattgatcataaaagttaaaatgcatccgaattggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcat |
47688246 |
T |
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| Q |
319 |
cagaagatttgaggtaaaggttttcgccgccatcaccaccgccgcctcgaccttgatcagatgaagaattcatcccaatctcttgttgcttgccactacc |
418 |
Q |
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| T |
47688245 |
cagaagatttgaggtaaaggttttcgccgccatcaccaccgccgcctcgaccttgatcagatgaagaactcatcccaatctcttgttgcttgccactacc |
47688146 |
T |
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| Q |
419 |
tccaataagacttctgtgcaaaccctctcctccaccgcggatgaagtcaggaagcccaccaccagaacccaatgttgagctactacctcctc |
510 |
Q |
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| T |
47688145 |
tccaataagacttctgtgcaaaccctctcctccaccgcggatgaagtcaggaaacccaccaccagaacccaatgttgagctactacttcctc |
47688054 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 35836306 - 35836358
Alignment:
| Q |
304 |
actagttcccatcatcagaagatttgaggtaaaggttttcgccgccatcacca |
356 |
Q |
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|||| ||||||||| |||||||||| |||||||| ||||||||||||||||| |
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| T |
35836306 |
actaattcccatcaccagaagatttcaggtaaagtgtttcgccgccatcacca |
35836358 |
T |
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