View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7822_low_4 (Length: 452)

Name: NF7822_low_4
Description: NF7822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7822_low_4
NF7822_low_4
[»] chr6 (3 HSPs)
chr6 (11-437)||(21480917-21481336)
chr6 (204-414)||(19700851-19701071)
chr6 (204-302)||(766903-767001)
[»] chr2 (5 HSPs)
chr2 (204-437)||(26661184-26661418)
chr2 (235-414)||(6049616-6049796)
chr2 (202-243)||(26667111-26667152)
chr2 (163-200)||(35729106-35729143)
chr2 (202-246)||(6051977-6052021)
[»] scaffold0500 (1 HSPs)
scaffold0500 (199-285)||(358-444)
[»] chr4 (3 HSPs)
chr4 (235-413)||(13893921-13894100)
chr4 (204-256)||(20856391-20856443)
chr4 (163-199)||(40049550-40049586)
[»] chr3 (1 HSPs)
chr3 (200-432)||(15762192-15762435)
[»] chr1 (4 HSPs)
chr1 (235-319)||(44305833-44305917)
chr1 (202-310)||(22893466-22893574)
chr1 (209-351)||(29845297-29845439)
chr1 (372-414)||(22893647-22893689)
[»] chr7 (7 HSPs)
chr7 (235-318)||(13331874-13331957)
chr7 (235-318)||(13342789-13342872)
chr7 (203-246)||(13323815-13323858)
chr7 (147-190)||(22707193-22707236)
chr7 (163-192)||(22689772-22689801)
chr7 (376-432)||(13331748-13331804)
chr7 (376-432)||(13342663-13342719)
[»] chr5 (4 HSPs)
chr5 (235-318)||(5672345-5672428)
chr5 (202-231)||(21635659-21635688)
chr5 (202-231)||(21643906-21643935)
chr5 (376-432)||(5672219-5672275)
[»] scaffold0586 (2 HSPs)
scaffold0586 (202-319)||(9280-9397)
scaffold0586 (372-414)||(9462-9504)
[»] chr8 (4 HSPs)
chr8 (205-414)||(10637313-10637534)
chr8 (205-319)||(32718167-32718281)
chr8 (372-414)||(32718060-32718102)
chr8 (157-198)||(11923007-11923048)


Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Original strand, 21480917 - 21481336
Alignment:
Q  11 agaatataggttgtgatggtggacttttgtttagatatgaagatggtgaagtgttgtggtatgggtgggtcaatctctctgaattctatcgcacactctc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21480917 agaatataggttgtgatggtggacttttgtttagatatgaagatggtgaagtgttgtggtatgggtgggtcaatctctctgaattctatcgcacactctc 21481016  T
Q  111 agtcacacacgttagagaggagnnnnnnnngttgcataattaaggcttaaattgtgcaacattgcacatgttagaaaaacccataaaaatcttagggggt 210  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        |||||    
T  21481017 agtcacacacgttagagaggagaaaaaaaagttgcataattaaggcttaaattgtgcaacattgtacatgttagaaaaacccataaa--------ggggt 21481108  T
Q  211 gtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaat 310  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21481109 gtttgtttgagggttacaaaaataattcctaggaatttaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaat 21481208  T
Q  311 acatttttctcataaaagtcttttacccacgttca-ccccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagttttattc 409  Q
    ||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21481209 acatttttctcaggaaagtcttttacccatgttcacccccatgttctacccatttttcctgtcttttattcccctgagatagcatgggaaagttttattc 21481308  T
Q  410 ccagggaataaaaaccatgatctccaac 437  Q
    |||| |||||||||||||||||||||||    
T  21481309 ccagagaataaaaaccatgatctccaac 21481336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 204 - 414
Target Start/End: Original strand, 19700851 - 19701071
Alignment:
Q  204 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 303  Q
    ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| || ||| ||||||||||||  ||||||  ||||||||||| |    
T  19700851 agggggtgtttgtttgagggtaataaaaataattccaaggaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtc 19700950  T
Q  304 aaggaatacatttttctcataaaagtcttttacccacgtt----ca------ccccatgttctacccatttttcc-tgtcttttattcccatgagatagc 392  Q
     ||||||||| ||||| ||  |||| | | ||||||||||    ||      ||||| |||| |||| ||||||| |  |||||||||||| ||||||||    
T  19700951 caggaatacaattttcccaggaaagccatctacccacgttttcccatttcttccccacgttc-acccttttttccatcccttttattcccaagagatagc 19701049  T
Q  393 atgggaaagttttattcccagg 414  Q
     |||||||||||||||||||||    
T  19701050 ttgggaaagttttattcccagg 19701071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 767001 - 766903
Alignment:
Q  204 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgc 302  Q
    |||||| ||||||||||| ||||||| |||| || ||| |||||||||| || |||| | |||| || ||||||||||||| || ||| | ||||||||    
T  767001 agggggcgtttgtttgagagttacaataatagtttctatgaatctaaggatgaaattaagtattcctctgtttggtagatgagagtaagaaaaatatgc 766903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 204 - 437
Target Start/End: Original strand, 26661184 - 26661418
Alignment:
Q  204 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 303  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661184 aggggatgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 26661283  T
Q  304 aaggaatacatttttctcataaaagtcttttacccacgttc-accccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagt 402  Q
    |||||||||||||||| ||  ||||||||||||||||||||  ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26661284 aaggaatacatttttcccaggaaagtcttttacccacgttctcccccacgttctacccatttttcctgtctttcattccaatgagatagcatgggaaagt 26661383  T
Q  403 tttattcccagggaataaaaaccatgatctccaac 437  Q
    |||||| ||||||||||||||||||||||||||||    
T  26661384 tttatttccagggaataaaaaccatgatctccaac 26661418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 414
Target Start/End: Original strand, 6049616 - 6049796
Alignment:
Q  235 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttctcataaaagtctttt 334  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||| ||  ||||    |     
T  6049616 attcctaggaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagcagctc 6049715  T
Q  335 acccacgttc-accccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagttttattcccagg 414  Q
     |||||||||  ||||| || | ||  |||||| || ||||||||||||||  |||||| ||||||| |||||||||||||    
T  6049716 ccccacgttctcccccacgtcccacatattttttctctcttttattcccatctgatagcttgggaaacttttattcccagg 6049796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 26667152 - 26667111
Alignment:
Q  202 ttagggggtgtttgtttgagggttacaaaaataattcctagg 243  Q
    |||||||| ||||||||||||||||||||| | |||||||||    
T  26667152 ttagggggcgtttgtttgagggttacaaaatttattcctagg 26667111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 35729143 - 35729106
Alignment:
Q  163 tgtgcaacattgcacatgttagaaaaacccataaaaat 200  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  35729143 tgtgcaatattgcacatgttagacaaacccataaaaat 35729106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 6052021 - 6051977
Alignment:
Q  202 ttagggggtgtttgtttgagggttacaaaaataattcctaggaat 246  Q
    |||||||||||||||||||||||| ||||| | ||||| ||||||    
T  6052021 ttagggggtgtttgtttgagggtttcaaaacttattccaaggaat 6051977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 444 - 358
Alignment:
Q  199 atcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  444 atcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 413
Target Start/End: Complemental strand, 13894100 - 13893921
Alignment:
Q  235 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttctcataaaagtctttt 334  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||  ||||    |     
T  13894100 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagcagctc 13894001  T
Q  335 acccacgttc-accccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagttttattcccag 413  Q
     |||||||||  ||||| |||| ||  |||||| || ||||||||||||||  |||||| ||||||| ||||||||||||    
T  13894000 ccccacgttctcccccacgttccacatattttttctctcttttattcccatctgatagcttgggaaacttttattcccag 13893921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 20856391 - 20856443
Alignment:
Q  204 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctgg 256  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  20856391 agggggtgtttgattgagggttagaaaaatagttcctaggaatctaaggctgg 20856443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 40049586 - 40049550
Alignment:
Q  163 tgtgcaacattgcacatgttagaaaaacccataaaaa 199  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  40049586 tgtgcaatattgcacatgttagacaaacccataaaaa 40049550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 200 - 432
Target Start/End: Complemental strand, 15762435 - 15762192
Alignment:
Q  200 tcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaata 299  Q
    |||||||| ||||||||| |||||||| || || |||||  ||||||||||||||||||| ||||||| ||||||||||||| |||| |  |||||||||    
T  15762435 tcttagggtgtgtttgttagagggttaaaacaaaaattctcaggaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaata 15762336  T
Q  300 tgccaaggaatacatttttctcataaaagtcttttacccacgttc-----------accccatgttctacccatttttcctgtcttttattcccatgaga 388  Q
    |||| ||||||||||||||| ||  |||||  |  ||||||||||            ||||| |||| ||| ||||||| |  ||| ||||||||||| |    
T  15762335 tgcctaggaatacatttttcccaggaaagtaatacacccacgttctcccccattttcccccacgttcaacctatttttcatcccttctattcccatgaaa 15762236  T
Q  389 tagcatgggaaagttttattcccagggaataaaaaccatgatct 432  Q
    |||| |||||||| |||||||||| |||||  ||||||||||||    
T  15762235 tagcttgggaaagatttattcccatggaatggaaaccatgatct 15762192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 44305833 - 44305917
Alignment:
Q  235 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttc 319  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| | |||||||||||||    
T  44305833 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaagaatacatttttc 44305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 22893466 - 22893574
Alignment:
Q  202 ttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatg 301  Q
    |||||||||||||||||||| ||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  |||||||||||    
T  22893466 ttagggggtgtttgtttgagagtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatg 22893565  T
Q  302 ccaaggaat 310  Q
     ||||||||    
T  22893566 tcaaggaat 22893574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 209 - 351
Target Start/End: Original strand, 29845297 - 29845439
Alignment:
Q  209 gtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaagga 308  Q
    |||||||||| ||||||||||||||||||   |||||  ||||| || |||| |||||| ||||||||||||||| |||| |||  ||||||||  ||||    
T  29845297 gtgtttgtttaagggttacaaaaataattttaaggaaagtaaggttgaaattaaatattcctttgtttggtagattggaacaaccaaaatatgcttagga 29845396  T
Q  309 atacatttttctcataaaagtcttttacccacgttcaccccat 351  Q
    ||| ||||| ||||  |||||| || ||||||||||| |||||    
T  29845397 ataaattttactcaggaaagtcattcacccacgttcatcccat 29845439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 22893647 - 22893689
Alignment:
Q  372 cttttattcccatgagatagcatgggaaagttttattcccagg 414  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  22893647 cttttattcccatgagatagcttgggaaagttttattcccagg 22893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 13331957 - 13331874
Alignment:
Q  235 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 318  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||| ||||||||||||||    
T  13331957 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccaggaatacattttt 13331874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 13342872 - 13342789
Alignment:
Q  235 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 318  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  ||||||||||||||    
T  13342872 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttt 13342789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 13323815 - 13323858
Alignment:
Q  203 tagggggtgtttgtttgagggttacaaaaataattcctaggaat 246  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||    
T  13323815 tagggggtgtttgtttgagggttacaaaatttattcccaggaat 13323858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 22707236 - 22707193
Alignment:
Q  147 taattaaggcttaaattgtgcaacattgcacatgttagaaaaac 190  Q
    ||||||||||||||  |||||||||||||||| |||||||||||    
T  22707236 taattaaggcttaagctgtgcaacattgcacaggttagaaaaac 22707193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 22689772 - 22689801
Alignment:
Q  163 tgtgcaacattgcacatgttagaaaaaccc 192  Q
    ||||||||||||||||||||||||||||||    
T  22689772 tgtgcaacattgcacatgttagaaaaaccc 22689801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 13331804 - 13331748
Alignment:
Q  376 tattcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatct 432  Q
    ||||||||||| ||||| ||||||||||| ||||||||| | | ||| |||||||||    
T  13331804 tattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatct 13331748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 13342719 - 13342663
Alignment:
Q  376 tattcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatct 432  Q
    ||||||||||| ||||| ||||||||||| ||||||||| | | ||| |||||||||    
T  13342719 tattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatct 13342663  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 5672428 - 5672345
Alignment:
Q  235 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 318  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  ||||||||||||||    
T  5672428 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttt 5672345  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 21635659 - 21635688
Alignment:
Q  202 ttagggggtgtttgtttgagggttacaaaa 231  Q
    ||||||||||||||||||||||||||||||    
T  21635659 ttagggggtgtttgtttgagggttacaaaa 21635688  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 21643906 - 21643935
Alignment:
Q  202 ttagggggtgtttgtttgagggttacaaaa 231  Q
    ||||||||||||||||||||||||||||||    
T  21643906 ttagggggtgtttgtttgagggttacaaaa 21643935  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 5672275 - 5672219
Alignment:
Q  376 tattcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatct 432  Q
    ||||||||||| ||||| ||||||||||| ||||||||| | | ||| |||||||||    
T  5672275 tattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatct 5672219  T

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Target: scaffold0586 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 9280 - 9397
Alignment:
Q  202 ttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatg 301  Q
    |||||||||||||||||||||||   |||||||||| | |||||||||||| ||||||| || ||| ||||||||||||| ||||||  |||||||||||    
T  9280 ttagggggtgtttgtttgagggtagtaaaaataatttcaaggaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatg 9379  T
Q  302 ccaaggaatacatttttc 319  Q
     | |||||| || |||||    
T  9380 tccaggaatgcaattttc 9397  T

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Target: scaffold0586; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 9462 - 9504
Alignment:
Q  372 cttttattcccatgagatagcatgggaaagttttattcccagg 414  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  9462 cttttattcccatgagatagcttgggaaagttttattcccagg 9504  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 205 - 414
Target Start/End: Original strand, 10637313 - 10637534
Alignment:
Q  205 gggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcca 304  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| |     
T  10637313 gggggtgtttgtttgagggtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtcc 10637412  T
Q  305 aggaatacatttttctcataaaagtcttttacccacgtt------ca------ccccatgttctacccatttttcc-tgtcttttattcccatgagatag 391  Q
    |||||| || ||||| ||  |||| | | ||||||||||      ||      ||||| |||| |||| ||||||| |  ||||||||||||||||||||    
T  10637413 aggaatgcaattttcccaggaaagccatctacccacgttttcccccatttcttccccacgttc-acccttttttccatcccttttattcccatgagatag 10637511  T
Q  392 catgggaaagttttattcccagg 414  Q
    | |||||||||||||||||||||    
T  10637512 cttgggaaagttttattcccagg 10637534  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 205 - 319
Target Start/End: Complemental strand, 32718281 - 32718167
Alignment:
Q  205 gggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcca 304  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| |     
T  32718281 gggggtgtttgtttgagggtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtct 32718182  T
Q  305 aggaatacatttttc 319  Q
    |||||| || |||||    
T  32718181 aggaatgcaattttc 32718167  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 32718102 - 32718060
Alignment:
Q  372 cttttattcccatgagatagcatgggaaagttttattcccagg 414  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  32718102 cttttattcccatgagatggcttgggaaagttttattcccagg 32718060  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 11923048 - 11923007
Alignment:
Q  157 ttaaattgtgcaacattgcacatgttagaaaaacccataaaa 198  Q
    |||| |||||||| ||||||||||||||| ||||||||||||    
T  11923048 ttaacttgtgcaatattgcacatgttagacaaacccataaaa 11923007  T

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