View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7822_low_6 (Length: 416)
Name: NF7822_low_6
Description: NF7822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7822_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 38874166 - 38873786
Alignment:
| Q |
16 |
acatcagtacacatctaaccatgtgaatagaaaattcacaactggcacaatccacttgatttggaaaaaataacagaaacaaaacaacatgacaagaaaa |
115 |
Q |
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| T |
38874166 |
acatcagtacacatctaaccatgtgaatagaaaattcacaactggcacaatccacttgatttggaaaaaataacagaaacagaacaacatgacaagaaaa |
38874067 |
T |
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| Q |
116 |
ggacacgggcggctaagctttactgctcatcccattcgtcgttcttgtatgatacaagtgtgtcaaccttgtgaatctgcataaccaaaataagtattac |
215 |
Q |
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| T |
38874066 |
ggacacgggcggctaagctttactgctcatcccattcgtcgttcttgtatgatacaagtgtgtcaaccttgtgaatctgcataaccaaaataagtattac |
38873967 |
T |
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| Q |
216 |
ttatagccaaaggataaaccatgtctgtcgataaataacaaaattggttaagtccaaattgcaccttggtatcaaaggaatgcagtttcaccatttgtgg |
315 |
Q |
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| T |
38873966 |
ttatagccaaaggataaaccatgtctgtcgataaataacaaaattggttaagtccaaattgcaccttagtatcaaaggaatgcagtttcaccatttgtgg |
38873867 |
T |
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| Q |
316 |
attagcaatcagctttggatcactctcagtccaagtgaatggaacttccacatctgtgttagtatatgctaacacatcaaa |
396 |
Q |
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| T |
38873866 |
attagcaatcagctttggatcactctcagtccaagtgaatggaacttccacatctgtgttagtatatgctaacacatcaaa |
38873786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 351177 - 351324
Alignment:
| Q |
46 |
aaaattcacaactggcacaatccacttgatttggaaaaaataacagaaacaaaacaacatgacaagaaaaggacacgggcggctaagctttactgctcat |
145 |
Q |
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| T |
351177 |
aaaattcacaactcatacaattcacttgatttgaaaaaaatcacataaatagaacaacgtgaaaataaaaggacacatgcaggtcaattttaccgcttat |
351276 |
T |
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| Q |
146 |
cccattcgtcgttcttgtatgatacaagtgtgtcaaccttgtgaatct |
193 |
Q |
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| T |
351277 |
cgcatttgacattcttgtatgatacaagtgtgttaaccttgtaaatct |
351324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 351364 - 351425
Alignment:
| Q |
321 |
caatcagctttggatcactctcagtccaagtgaatggaacttccacatctgtgttagtatat |
382 |
Q |
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| T |
351364 |
caatcaacttaggatcactctcaatccaattgaatgaaacttccatatatgtgttattatat |
351425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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