View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7822_low_7 (Length: 332)
Name: NF7822_low_7
Description: NF7822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7822_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 4711915 - 4711592
Alignment:
| Q |
1 |
tttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711915 |
tttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccat |
4711816 |
T |
|
| Q |
101 |
ttccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711815 |
ttccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaa |
4711716 |
T |
|
| Q |
201 |
gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711715 |
gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg |
4711616 |
T |
|
| Q |
301 |
gtttgatttgaatgcaatattctt |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4711615 |
gtttgatttgaatgcaatattctt |
4711592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 4637111 - 4637432
Alignment:
| Q |
3 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
102 |
Q |
| |
|
|||| |||||||||||||||| || ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
4637111 |
tccaagtaaagaggaaaatcattgccccaattgcgaaacatacctgtatcatcacttggtggaacttgattttgaccaacgttgactctataaaccatct |
4637210 |
T |
|
| Q |
103 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
202 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| || |||||| || ||||||| ||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
4637211 |
ccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggtttcaaatagtaatttgggtcattgaggtttgtgtaatagagaaaaga |
4637310 |
T |
|
| Q |
203 |
aggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggt |
302 |
Q |
| |
|
|||||| ||||||| |||||| |||||||| ||||||||| |||||||||| || |||||| |||| ||||||||||||||| ||| ||| ||||||||| |
|
|
| T |
4637311 |
aggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtttatgctgttaggaatgaaagttatgtttaacttttcatttggt |
4637410 |
T |
|
| Q |
303 |
ttgatttgaatgcaatattctt |
324 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
4637411 |
ttgatttgtatgcaatattctt |
4637432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 4697031 - 4696710
Alignment:
| Q |
3 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
102 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||| || ||||||||||| ||| | | |
|
|
| T |
4697031 |
tccaagtaacgaggaaaatcattgtcccagttacgaaacataccagtatcttggtttggtggaacttgattgccacccacattgactctataaaccgtct |
4696932 |
T |
|
| Q |
103 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
202 |
Q |
| |
|
| || |||||||||||| ||| |||||| ||| ||||||| |||||||||||| ||||| | |||||||||||| | |||| ||||||||||||||||| |
|
|
| T |
4696931 |
ctaacgctttgtcgttaagaacttggtagtccctgttgtctaagtcaagtgatatcaaatgatattttgggtcactgaggtttgtgtaatagagaaaaga |
4696832 |
T |
|
| Q |
203 |
aggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggt |
302 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
4696831 |
aggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttatgttgctgggaatgaaagttatgtttaacttctcatttggt |
4696732 |
T |
|
| Q |
303 |
ttgatttgaatgcaatattctt |
324 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
4696731 |
ttggtttgaatgcaatattctt |
4696710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 4672970 - 4673278
Alignment:
| Q |
16 |
gaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccatttccaaagctttgtc |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| | |||||||||||| ||| |||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
4672970 |
gaaaatcattgtcccaattacgaaacataccagtatcgtcacccggtggaacttgactttcaccaacgttgactctataaaccatttccaaagctttttc |
4673069 |
T |
|
| Q |
116 |
gttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| | || ||||||||| | |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
4673070 |
gttatgaatttggtattccgtgttgtctaagtcaagtgatttcaaatgataatttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacaca |
4673169 |
T |
|
| Q |
216 |
atttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggtttgatttgaatgc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||| | || ||| || ||||||||||| ||||| ||||||||||||| || |||||||| || | |
|
|
| T |
4673170 |
atttcgattccgttaatgaaagcatatttaacatttgatttgttcatgatgcttggaatgaaatttatgtttagcttctcattgggcttgatttggatac |
4673269 |
T |
|
| Q |
316 |
aatattctt |
324 |
Q |
| |
|
|| |||||| |
|
|
| T |
4673270 |
aaaattctt |
4673278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 4864176 - 4864500
Alignment:
| Q |
3 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
102 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||||||||||| ||||| | |||||||||||| ||| ||| || ||||||||||| ||| | | |
|
|
| T |
4864176 |
tccaagtaacgaggaaaatcattgtcccaattacgaaacataccagtatcatcacccggtggaacttgactttcaccgacattgactctataaaccgtct |
4864275 |
T |
|
| Q |
103 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
202 |
Q |
| |
|
| || |||||||||||| ||| |||||| | |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
4864276 |
ctaacgctttgtcgttaagaacttggtagttcgtgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggtttgtgtaatatagaaaaga |
4864375 |
T |
|
| Q |
203 |
aggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtt---tggaatgaaagttatgcttagcttctcattt |
299 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||| ||||||||||||||||| |||||||| || || ||||||||||||||| |||||||||||||| |
|
|
| T |
4864376 |
aggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctcattt |
4864475 |
T |
|
| Q |
300 |
ggtttgatttgaatgcaatattctt |
324 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
4864476 |
gatttgatttgaatgcaatattctt |
4864500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 4783676 - 4783355
Alignment:
| Q |
3 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
102 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | | |
|
|
| T |
4783676 |
tccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtct |
4783577 |
T |
|
| Q |
103 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
202 |
Q |
| |
|
| |||||||||| |||| ||| ||| || |||||||||||||| || || | || | ||| || | | ||||| | |||| ||||||||||||||||| |
|
|
| T |
4783576 |
ctaaagctttgtagttaagaacttgataatccgtgttgtcaaaaccaggtaaattgataagataatcttggtcactgaggtttgtgtaatagagaaaaga |
4783477 |
T |
|
| Q |
203 |
aggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggt |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||| | | || ||| ||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
4783476 |
aggcatagacacaacttcgattccgttaatgaaagcataactaggaatcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggt |
4783377 |
T |
|
| Q |
303 |
ttgatttgaatgcaatattctt |
324 |
Q |
| |
|
|||||||| ||| ||||||||| |
|
|
| T |
4783376 |
ttgatttggatggaatattctt |
4783355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 4816105 - 4815784
Alignment:
| Q |
3 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
102 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | | |
|
|
| T |
4816105 |
tccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtct |
4816006 |
T |
|
| Q |
103 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
202 |
Q |
| |
|
| |||||||||| |||| ||| ||||||||||||||||||| | || || | || | | | || | | ||||| | |||| ||||||||||||||||| |
|
|
| T |
4816005 |
ctaaagctttgttgttaagaacttggtattccgtgttgtcagaaccaggtaacttgatacgataatcttggtcactgaggtttgtgtaatagagaaaaga |
4815906 |
T |
|
| Q |
203 |
aggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggt |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||| | | || ||| ||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
4815905 |
aggcatagacacaacttcgattccgttaatgaaagcataactaggactcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggt |
4815806 |
T |
|
| Q |
303 |
ttgatttgaatgcaatattctt |
324 |
Q |
| |
|
|||||||| ||| ||||||||| |
|
|
| T |
4815805 |
ttgatttggatggaatattctt |
4815784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 4845853 - 4845532
Alignment:
| Q |
3 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
102 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||| ||||||||||||||||| | ||||| |||||||||||| |||||| ||||||||||| ||||| | |
|
|
| T |
4845853 |
tccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattttcaccaacattgactctataaaccatct |
4845754 |
T |
|
| Q |
103 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
202 |
Q |
| |
|
|||||||||| || ||| |||||| |||||| ||||||||||| ||| | |||| ||| || ||| ||||| ||| ||||||||||||||||| |
|
|
| T |
4845753 |
ccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaatttgaaataataatttaagtcatctgggtttgtgtaatagagaaaaga |
4845654 |
T |
|
| Q |
203 |
aggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggt |
302 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||| ||||||| | | ||||||||||| |||| |||||||||| |||||||| |||||||| |
|
|
| T |
4845653 |
aggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaaagaaagttatgtttagcttcccatttggt |
4845554 |
T |
|
| Q |
303 |
ttgatttgaatgcaatattctt |
324 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
4845553 |
ttgatctgaatgcaatattctt |
4845532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 4643961 - 4644200
Alignment:
| Q |
3 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
102 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| | |
|
|
| T |
4643961 |
tccaagtaacgaggataatcattgtcccaattacgaaacatacctgtatcttggtttggtggaacttgaattcgaccaacgttgactctataaaccatct |
4644060 |
T |
|
| Q |
103 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
202 |
Q |
| |
|
||||||||||||| ||| ||||||||||| | | ||| || || | | || | | | || | | ||||| | |||| ||||||||||||||||| |
|
|
| T |
4644061 |
ccaaagctttgtcattaagaatttggtatggtatatcttcagagccatctaacttgatacgataatcttggtcactgaggtttgtgtaatagagaaaaga |
4644160 |
T |
|
| Q |
203 |
aggcatagacacaatttcgattccgttaatgaaagcataa |
242 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4644161 |
aggcatagacacaacttcgattccgttaatgaaagcataa |
4644200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 4667195 - 4667431
Alignment:
| Q |
3 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
102 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||||||||||| ||||| | |||||||||||| ||| ||||||| |||||||||| ||| | | |
|
|
| T |
4667195 |
tccaagtaacgaggaaaatcattgtcccaattacgaaacataccagtatcgtcaccaggtggaacttgactttcaccaacgctgactctataaaccgtct |
4667294 |
T |
|
| Q |
103 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
202 |
Q |
| |
|
||| |||||||| |||| |||| |||||||| || |||||||||||||| || ||||| | || ||||||||| | |||| ||||||||||||||||| |
|
|
| T |
4667295 |
ccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagtaatgtcaaatgataatttgggtcactgaggtttgtgtaatagagaaaaga |
4667394 |
T |
|
| Q |
203 |
aggcatagacacaatttcgattccgttaatgaaagca |
239 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||| |
|
|
| T |
4667395 |
cggcatagacacaatctcaattccgttgatgaaagca |
4667431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 188 - 324
Target Start/End: Original strand, 4653935 - 4654071
Alignment:
| Q |
188 |
gtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgctt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| || |
|
|
| T |
4653935 |
gtaatagagaaaagaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaaagttatgttt |
4654034 |
T |
|
| Q |
288 |
agcttctcatttggtttgatttgaatgcaatattctt |
324 |
Q |
| |
|
||||||| ||| |||| || ||| ||||||||||||| |
|
|
| T |
4654035 |
agcttcttattcggttggacttggatgcaatattctt |
4654071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 4631181 - 4631416
Alignment:
| Q |
3 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
102 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||| || ||| |
|
|
| T |
4631181 |
tccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcataatttggtggaacttgattttcaccagcgttgactctataaactgttt |
4631280 |
T |
|
| Q |
103 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
202 |
Q |
| |
|
||| |||||||| |||| |||| |||||||| | ||||||| |||||| || ||| |||| || | |||| | || | ||||||||||||||||| |
|
|
| T |
4631281 |
ccatagctttgttgttaagaatctggtattcaccgctgtcaaaatcaagtatctttaaatggtagttcgtgtcactgagattagtgtaatagagaaaaga |
4631380 |
T |
|
| Q |
203 |
aggcatagacacaatttcgattccgttaatgaaagc |
238 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| |
|
|
| T |
4631381 |
aggcatagacacaatctcaattccgttgatgaaagc |
4631416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 4653798 - 4653865
Alignment:
| Q |
27 |
tcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctata |
94 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
4653798 |
tcccaattacgaaacaaaccagtatctaggtttggtggaacttgattttcaccaacgttgacactata |
4653865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 4644216 - 4644270
Alignment:
| Q |
270 |
ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctt |
324 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| ||||| |||||||| |||| |
|
|
| T |
4644216 |
ggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaatactctt |
4644270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 4631451 - 4631505
Alignment:
| Q |
270 |
ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctt |
324 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
4631451 |
ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctt |
4631505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 309
Target Start/End: Complemental strand, 18925583 - 18925280
Alignment:
| Q |
3 |
tccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccattt |
102 |
Q |
| |
|
|||| |||| |||||||||| ||||||||| ||||||||||||||| || | || ||||||||||||| | ||||||| |||||||||| ||| | | |
|
|
| T |
18925583 |
tccaagtaacgaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttcgtggaacttgattatcaccaacgctgactctataaaccgtct |
18925484 |
T |
|
| Q |
103 |
ccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaaga |
202 |
Q |
| |
|
| || ||||||| | |||| ||||| | |||| |||| | ||||| | || ||| | | |||| |||||| |||| ||||||||||||||||| |
|
|
| T |
18925483 |
ctaacactttgtcactgctgattttgtatttcatgttttcaaggccaagtaactttaaatgatgatttgagtcattgaggtttgtgtaatagagaaaaga |
18925384 |
T |
|
| Q |
203 |
aggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggt |
302 |
Q |
| |
|
|||||| ||||| || || |||||||| |||||||||||| | |||| ||||||||| ||||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
18925383 |
aggcatggacacgatctcaattccgttgatgaaagcataa---gcctttggttgatttatggtgtttggaatgaaagttatatttaacttctcagttggt |
18925287 |
T |
|
| Q |
303 |
ttgattt |
309 |
Q |
| |
|
|| |||| |
|
|
| T |
18925286 |
ttcattt |
18925280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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