View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7823_high_12 (Length: 295)
Name: NF7823_high_12
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 35795842 - 35795571
Alignment:
| Q |
9 |
gaagaatattgaggagttctggtgataatgttagtgatcttgtgactcacttgcctggtcagcctcaagtagacttccagcactatgctggttatgtcac |
108 |
Q |
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| T |
35795842 |
gaagaaaattgaggagttctggtgataatgttagtgatcttgtgactcacttgcctggtcagcctcaagtagacttccagcactatgctggttatgtcac |
35795743 |
T |
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| Q |
109 |
tgtcaataaaaccaatggaagagcactcttttattggttctatgaggctatgactaagccagaagagaaaccattggtgttgtggcttaatggaggtaaa |
208 |
Q |
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| T |
35795742 |
tgtcaataaaaccaatggaagagcactcttttattggttctatgaggctatggctaagccagaagagaaaccattggtgttgtggcttaatggaggtaaa |
35795643 |
T |
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| Q |
209 |
accatatactaannnnnnnnctttctttctgtcatataaaaaactaacatgttccacatttaatgaaataag |
280 |
Q |
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| T |
35795642 |
accatatactaattttttttctttctttctgtcatataaaaaactaacatgttccacatttaatgaaataag |
35795571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 42 - 208
Target Start/End: Original strand, 3338457 - 3338623
Alignment:
| Q |
42 |
gtgatcttgtgactcacttgcctggtcagcctcaagtagacttccagcactatgctggttatgtcactgtcaataaaaccaatggaagagcactctttta |
141 |
Q |
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| T |
3338457 |
gtgatcttgtgactaacttaccaggccagcctcaagcagatttcaaacactatgctggttatgtcattgtcaatgaaaccaatggaagatcactctttta |
3338556 |
T |
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| Q |
142 |
ttggttctatgaggctatgactaagccagaagagaaaccattggtgttgtggcttaatggaggtaaa |
208 |
Q |
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| T |
3338557 |
ttggttttttgaggccgtgacaaaacctgaggagaaaccattgcttttatggcttaatggaggtaaa |
3338623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 3332111 - 3332275
Alignment:
| Q |
43 |
tgatcttgtgactcacttgcctggtcagcctcaagtagacttccagcactatgctggttatgtcactgtcaataaaaccaatggaagagcactcttttat |
142 |
Q |
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||||||||||||| |||| ||||| ||||||| || | ||||||||||||||||| |||||||| || ||| ||||||||||||||||| | ||||| |
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| T |
3332111 |
tgatcttgtgactaacttacctggccagcctcctgtttatttccagcactatgctggatatgtcacagttaatgaaaccaatggaagagcattgttttac |
3332210 |
T |
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| Q |
143 |
tggttctatgaggctatgactaagccagaagagaaaccattggtgttgtggcttaatggaggtaa |
207 |
Q |
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| T |
3332211 |
tggttttttgaggccattactaagcctgaagacaaaccattggttttatggcttaatggaggtaa |
3332275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 3228139 - 3228236
Alignment:
| Q |
104 |
gtcactgtcaataaaaccaatggaagagcactcttttattggttctatgaggctatgactaagccagaagagaaaccattggtgttgtggcttaatgg |
201 |
Q |
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|||| |||||||||||||||||||||| | |||||||||||||| | ||||| |||| || || | ||||||||||| | |||||||||||||| |
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| T |
3228139 |
gtcagtgtcaataaaaccaatggaagatctctcttttattggttttttgaggtcgtgaccaaacctaaggagaaaccattacttttgtggcttaatgg |
3228236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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