View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7823_high_3 (Length: 441)
Name: NF7823_high_3
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 6 - 434
Target Start/End: Complemental strand, 38868432 - 38868004
Alignment:
| Q |
6 |
aagatgttcacaaattagaacagttatatgcttttaccataatcaaaagtactttggaagactgtaggaatgtctttgagaggaaagtctatataagact |
105 |
Q |
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| T |
38868432 |
aagatgttcacaaattagaacagttatatgcttttaccataatcaaaagtactttggaagactataggaatgtctttgagaggaaagtctatataagact |
38868333 |
T |
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| Q |
106 |
agaagataactttgacatattgaaggattcaaagccactagatttgaggccaggttaatttctgtggtgcagctgaatcatttgacatgattaagagccg |
205 |
Q |
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| T |
38868332 |
agaagataactttgacatattgaaggattcaaagccactagatttgagaccaggttaatttctgtggtgcagctgaatcatttggcatgattaagagccg |
38868233 |
T |
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| Q |
206 |
gcaagtatatacatgccactataaacaagctcataaattattgtgtataatcatgagttatgatcagagtgggtaaatttgcatatgatgtgtgacatgc |
305 |
Q |
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| T |
38868232 |
gcaagtatatacatgccactataaacaagctcataaattattgtgtataatcatgacttatgatcagagtgggtaaatatgcatatgatatgtgacatgc |
38868133 |
T |
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| Q |
306 |
atatttccaacataagatcattaattgtcttgggagcaataaaatgtcccacatcttttaaaacatagaatatgcaatggtttatatccttccaacacag |
405 |
Q |
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| T |
38868132 |
atatttccaacataagaccattaattgtcttgggagcaataaaatgtctcacatcgtttaaaacatagaatatgcaatggtttatgtccttccaacacag |
38868033 |
T |
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| Q |
406 |
ccaattgtttgctgattgattaacaccaa |
434 |
Q |
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| T |
38868032 |
ccaattgttagctgattgattaacaccaa |
38868004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 284 - 434
Target Start/End: Original strand, 38807226 - 38807377
Alignment:
| Q |
284 |
ttgcatatgatgtgtgacatgcatatttccaacataagatcattaattgtcttgggagcaataaaatgtcccacatcttttaaaacatagaatatgcaat |
383 |
Q |
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| T |
38807226 |
ttgcatatgatgtgtgacatgcatatttccaacataagaccactaactgtcttgggagcaataaaatgtcccacatcgtttaaaacataattaatgcaat |
38807325 |
T |
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| Q |
384 |
ggtttatatccttccaacacagccaattgtttgctga-ttgattaacaccaa |
434 |
Q |
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| T |
38807326 |
ggtttataggcttccaacacagccaattgtttgctgagttgattaacaccaa |
38807377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 284 - 434
Target Start/End: Complemental strand, 38866193 - 38866041
Alignment:
| Q |
284 |
ttgcatatgatgtgtgacatgcatatttccaacataagatcattaattgtcttggg-agcaataaaatgtcccacatcttttaaaacatagaatatgcaa |
382 |
Q |
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| T |
38866193 |
ttgcatatgacctgtgacatgcatatttccaacataagaccaccaagtgtcttggggagcaataaaatgtcccacatcggttagaacataaaatatgcaa |
38866094 |
T |
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| Q |
383 |
tggtttatatccttccaacacagccaattgtttgctga-ttgattaacaccaa |
434 |
Q |
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| T |
38866093 |
ttgtttataaacttccaacacagccaattgttcgctgagttgattaacaccaa |
38866041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 39310881 - 39310785
Alignment:
| Q |
339 |
gagcaataaaatgtcccacatcttttaaaacatagaatatgcaatggtttatatccttccaacacagccaattgtttgctga-ttgattaacaccaa |
434 |
Q |
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| T |
39310881 |
gagcaataaaatgtcccacatcgtttaaaacatagaatatgcaatggtttataaacttccaacacagccaattgttcgctgagttgatttacaccaa |
39310785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 339 - 434
Target Start/End: Original strand, 38749953 - 38750049
Alignment:
| Q |
339 |
gagcaataaaatgtcccacatcttttaaaacatagaatatgcaatggtttatatccttccaacacagccaattgtttgctga-ttgattaacaccaa |
434 |
Q |
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| T |
38749953 |
gagcaataaaatgtcccacatcgtttagaacatagaatatgaaatggtttataaccttccaacacagccatttgtttgctgagttgaataacaccaa |
38750049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 38849149 - 38849053
Alignment:
| Q |
339 |
gagcaataaaatgtcccacatcttttaaaacatagaatatgcaatggtttatatccttccaacacagccaattgtttgctga-ttgattaacaccaa |
434 |
Q |
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|||||||||||||||||||||| |||| |||| || ||||| || |||||||| |||||||||||| | ||||||||||| |||||||||||||| |
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| T |
38849149 |
gagcaataaaatgtcccacatcgtttagaacaaagcatatgaaacggtttataagcttccaacacagggatttgtttgctgagttgattaacaccaa |
38849053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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