View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7823_high_4 (Length: 435)

Name: NF7823_high_4
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7823_high_4
NF7823_high_4
[»] chr3 (6 HSPs)
chr3 (11-423)||(53544358-53544769)
chr3 (11-127)||(29132675-29132791)
chr3 (177-410)||(18987196-18987429)
chr3 (328-370)||(924698-924740)
chr3 (23-124)||(18987042-18987143)
chr3 (315-375)||(18255196-18255256)
[»] chr7 (5 HSPs)
chr7 (40-423)||(9029648-9030031)
chr7 (23-423)||(42001552-42001952)
chr7 (177-410)||(30067182-30067415)
chr7 (177-410)||(45136854-45137087)
chr7 (286-374)||(44583600-44583688)
[»] chr4 (6 HSPs)
chr4 (23-423)||(11235593-11235993)
chr4 (61-423)||(43192470-43192832)
chr4 (154-423)||(11225082-11225351)
chr4 (334-374)||(50939581-50939621)
chr4 (322-389)||(34707795-34707862)
chr4 (316-375)||(36896742-36896801)
[»] chr1 (5 HSPs)
chr1 (13-73)||(47741382-47741442)
chr1 (315-375)||(23090365-23090425)
chr1 (315-375)||(37892624-37892684)
chr1 (319-362)||(21668614-21668657)
chr1 (305-356)||(41532672-41532723)
[»] chr5 (1 HSPs)
chr5 (226-371)||(30443775-30443920)
[»] chr2 (1 HSPs)
chr2 (166-254)||(16969072-16969160)
[»] chr8 (1 HSPs)
chr8 (316-356)||(8162914-8162954)
[»] chr6 (3 HSPs)
chr6 (315-375)||(25972129-25972189)
chr6 (315-375)||(25976569-25976629)
chr6 (334-374)||(34418047-34418087)


Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Complemental strand, 53544769 - 53544358
Alignment:
Q  11 catcaccaatgctaccatcaccgatacctagcacccactcgctgaattgttttctttcttcaatatcagagctcgaagaaccatgtagaagacgcatgtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53544769 catcaccaatgctaccatcaccgatacctagcacccactcgctgaattgatttctttcttcaatatcagagctcgaagaaccatgtagaagacgcatgtt 53544670  T
Q  111 tgtcgacaatgttagtacctcacaaaatggccaaaggtatgaagagttaatgcttgcatttacaatctcttgtctattagctttaggtatgacgggaagg 210  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53544669 tgttgacaatgttagtacctcacaaaatggccaaaggtatgaagagttaatgcttgcatttacaatctcttgtctattagctttaggtatgacgggaagg 53544570  T
Q  211 atttgtctgaagtcaccaccaagtaccacaacctttccaccaaaagggatgtctgttcggccattgttttgaacacgaaggatatccctcaagctgcgat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53544569 atttgtctgaagtcaccaccaagtaccacaacctttccaccaaaagggatg-ctgttcggccattgttttgaacacgaaggatatccctcaagctgcgat 53544471  T
Q  311 ctaatgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgccttacaaaccaattcagctagagggctcttaggatgtat 410  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  53544470 ctagtgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgccttacaaaccaatttagctaaagggctcttaggatgtat 53544371  T
Q  411 tccacatgttgat 423  Q
    |||||||||||||    
T  53544370 tccacatgttgat 53544358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 29132791 - 29132675
Alignment:
Q  11 catcaccaatgctaccatcaccgatacctagcacccactcgctgaattgttttctttcttcaatatcagagctcgaagaaccatgtagaagacgcatgtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29132791 catcaccaatgctaccatcaccgatacctagcacccactcgctgaattgttttctttcttcaatatcagagctcgaagaaccatgtagaagacgcatgtt 29132692  T
Q  111 tgtcgacaatgttagta 127  Q
    |||||||||||||||||    
T  29132691 tgtcgacaatgttagta 29132675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 410
Target Start/End: Original strand, 18987196 - 18987429
Alignment:
Q  177 ctcttgtctattagctttaggtatgacgggaaggatttgtctgaagtcaccaccaagtaccacaacctttccaccaaaagggatgtctgttcggccattg 276  Q
    |||||||||||| ||||| | ||| || ||||| | ||||||||| ||||||||||| || ||||| || ||||| || ||||| || || |  |||||     
T  18987196 ctcttgtctattggctttcgctatcactggaagaacttgtctgaaatcaccaccaagcacgacaactttgccaccgaacgggatatccgtccttccatta 18987295  T
Q  277 ttttgaacacgaaggatatccctcaagctgcgatctaatgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgccttac 376  Q
    |||||||||||||| ||||||||||| || || || | ||||||||||||||||||||||||||| || ||||||||||| ||||| ||  |||||||||    
T  18987296 ttttgaacacgaagaatatccctcaaacttcggtcaagtgcttcaaaacagtgtttatgcatcattggcgcttcatcccaaataattaggcttgccttac 18987395  T
Q  377 aaaccaattcagctagagggctcttaggatgtat 410  Q
    | | ||| ||||| |  ||||| |||||||||||    
T  18987396 atatcaactcagccaacgggcttttaggatgtat 18987429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 924740 - 924698
Alignment:
Q  328 tgtttatgcatcataggtgcttcatcccatataatcagttttg 370  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||    
T  924740 tgtttatgcatcataggtgcttcgtcccaaataataagttttg 924698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 18987042 - 18987143
Alignment:
Q  23 taccatcaccgatacctagcacccactcgctgaattgttttctttcttcaatatcagagctcgaagaaccatgtagaagacgcatgtttgtcgacaatgt 122  Q
    ||||||| ||||| ||||  |||||||| || || | ||| || |||| |||||||||  | ||||||||||||| ||| |||||||| || ||||||||    
T  18987042 taccatctccgatgcctaaaacccactcactaaactctttcctctcttgaatatcagaatttgaagaaccatgtaaaaggcgcatgttggttgacaatgt 18987141  T
Q  123 ta 124  Q
    ||    
T  18987142 ta 18987143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 18255256 - 18255196
Alignment:
Q  315 tgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgcctta 375  Q
    |||||| ||||| ||||| |||||||| || |||||||||||||| || ||||| ||||||    
T  18255256 tgcttcgaaacaatgtttgtgcatcattggcgcttcatcccatatgataagtttagcctta 18255196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 40 - 423
Target Start/End: Complemental strand, 9030031 - 9029648
Alignment:
Q  40 agcacccactcgctgaattgttttctttcttcaatatcagagctcgaagaaccatgtagaagacgcatgtttgtcgacaatgttagtacctcacaaaatg 139  Q
    ||||||||||| |||||||||||||||||||  |||||||| || |||||||||||||  |||| ||||||||| |||||||||| |||||||||||||     
T  9030031 agcacccactcactgaattgttttctttcttggatatcagaacttgaagaaccatgtaagagacacatgtttgttgacaatgttaatacctcacaaaatt 9029932  T
Q  140 gccaaaggtatgaagagttaatgcttgcatttacaatctcttgtctattagctttaggtatgacgggaaggatttgtctgaagtcaccaccaagtaccac 239  Q
    | || | |||||| ||||||||||||||||||||||  ||||||||  |  |||||||||||||  ||||||| ||||| ||||||||||||||||||||    
T  9029931 gtcataagtatgatgagttaatgcttgcatttacaacttcttgtctcgttcctttaggtatgactagaaggatctgtctaaagtcaccaccaagtaccac 9029832  T
Q  240 aacctttccaccaaaagggatgtctgttcggccattgttttgaacacgaaggatatccctcaagctgcgatctaatgcttcaaaacagtgtttatgcatc 339  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| |||    
T  9029831 aacctttccaccaaaagggacgtctgtccggccattgttttgaacacgaaggatatccctcaaactgcgatgtagtgcctcaaaacagtgtttatggatc 9029732  T
Q  340 ataggtgcttcatcccatataatcagttttgccttacaaaccaattcagctagagggctcttaggatgtattccacatgttgat 423  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| |||||  |||||||| | |||||||||||||||||||    
T  9029731 ataggtgcctcatcccatataataagttttgccttacaaaccaatttagctaacgggctcttcgaatgtattccacatgttgat 9029648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 23 - 423
Target Start/End: Original strand, 42001552 - 42001952
Alignment:
Q  23 taccatcaccgatacctagcacccactcgctgaattgttttctttcttcaatatcagagctcgaagaaccatgtagaagacgcatgtttgtcgacaatgt 122  Q
    ||||||| |||||||| | |||||| || || || || |||||||| | ||||||||| || ||||||||||||| ||| |||||||| || ||||||||    
T  42001552 taccatctccgatacccaacacccattcactaaactgctttctttcgttaatatcagaacttgaagaaccatgtaaaaggcgcatgttagttgacaatgt 42001651  T
Q  123 tagtacctcacaaaatggccaaaggtatgaagagttaatgcttgcatttacaatctcttgtctattagctttaggtatgacgggaaggatttgtctgaag 222  Q
    || |||||| || ||  |||| |  ||||||||||| ||||||| |||||||| |||||||||||| |||||||| ||||| || || | |||   |||     
T  42001652 taatacctcgcagaactgccataaatatgaagagttgatgcttgtatttacaacctcttgtctatttgctttaggcatgactgggagtacttgatggaaa 42001751  T
Q  223 tcaccaccaagtaccacaacctttccaccaaaagggatgtctgttcggccattgttttgaacacgaaggatatccctcaagctgcgatctaatgcttcaa 322  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||| ||||| || || || |||||||| ||||| ||||| ||| | || |  || ||||    
T  42001752 tcaccaccaagtaccacaaccttcccttcaaaagggatatctgtccggccgttattatggacacgaagaatatctctcaaactgaggtccagcgcctcaa 42001851  T
Q  323 aacagtgtttatgcatcataggtgcttcatcccatataatcagttttgccttacaaaccaattcagctagagggctcttaggatgtattccacatgttga 422  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  ||||| || |||||||| |||||||||||    
T  42001852 aacagtgtttatgcatcataggtgcttcatcccatataataagttttgccttacaaaccaactcagctaatgggctttttggatgtatcccacatgttga 42001951  T
Q  423 t 423  Q
    |    
T  42001952 t 42001952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 177 - 410
Target Start/End: Complemental strand, 30067415 - 30067182
Alignment:
Q  177 ctcttgtctattagctttaggtatgacgggaaggatttgtctgaagtcaccaccaagtaccacaacctttccaccaaaagggatgtctgttcggccattg 276  Q
    |||||||||||| ||||| | ||| || ||||| | ||||||||| |||||||| || || ||||| || ||||| || ||||| || || |  |||||     
T  30067415 ctcttgtctattggctttcgctatcactggaagaacttgtctgaaatcaccaccgagcacgacaactttgccaccgaacgggatatccgtccttccatta 30067316  T
Q  277 ttttgaacacgaaggatatccctcaagctgcgatctaatgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgccttac 376  Q
    |||||||||||||| ||||||||||| || || || | ||||||||||||||||||||||||||| || ||||||||||| ||||| ||  |||||||||    
T  30067315 ttttgaacacgaagaatatccctcaaacttcggtcaagtgcttcaaaacagtgtttatgcatcattggcgcttcatcccaaataattaggcttgccttac 30067216  T
Q  377 aaaccaattcagctagagggctcttaggatgtat 410  Q
    | | ||| ||||| |  ||||| |||||||||||    
T  30067215 atatcaactcagccaacgggcttttaggatgtat 30067182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 177 - 410
Target Start/End: Complemental strand, 45137087 - 45136854
Alignment:
Q  177 ctcttgtctattagctttaggtatgacgggaaggatttgtctgaagtcaccaccaagtaccacaacctttccaccaaaagggatgtctgttcggccattg 276  Q
    |||||||||||| ||||| | ||| || ||||| | ||||||||| |||||||| || || ||||| || ||||| || ||||| || || |  |||||     
T  45137087 ctcttgtctattggctttcgctatcactggaagaacttgtctgaaatcaccaccgagcacgacaactttgccaccgaacgggatatccgtccttccatta 45136988  T
Q  277 ttttgaacacgaaggatatccctcaagctgcgatctaatgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgccttac 376  Q
    |||||||||||||| ||||||||||| || || || | ||||||||||||||||||||||||||| || ||||||||||| ||||| ||  |||||||||    
T  45136987 ttttgaacacgaagaatatccctcaaacttcggtcaagtgcttcaaaacagtgtttatgcatcattggcgcttcatcccaaataattaggcttgccttac 45136888  T
Q  377 aaaccaattcagctagagggctcttaggatgtat 410  Q
    | | ||| ||||| |  ||||| |||||||||||    
T  45136887 atatcaactcagccaacgggcttttaggatgtat 45136854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 44583688 - 44583600
Alignment:
Q  286 cgaaggatatccctcaagctgcgatctaatgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgcctt 374  Q
    |||||||||||||| ||| | | ||| | |||||||||||| ||||||||  |||| || || |||||||| || || |||||||||||    
T  44583688 cgaaggatatccctgaaggttctatcaactgcttcaaaacaatgtttatgggtcattggagcctcatcccaaatgatgagttttgcctt 44583600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 23 - 423
Target Start/End: Complemental strand, 11235993 - 11235593
Alignment:
Q  23 taccatcaccgatacctagcacccactcgctgaattgttttctttcttcaatatcagagctcgaagaaccatgtagaagacgcatgtttgtcgacaatgt 122  Q
    ||||||| |||||||| | |||||| || || || || |||||||| | ||||||||| || ||||||||||||| ||| |||||||| || ||||||||    
T  11235993 taccatctccgatacccaacacccattcactaaactgctttctttcgttaatatcagaacttgaagaaccatgtaaaaggcgcatgttagttgacaatgt 11235894  T
Q  123 tagtacctcacaaaatggccaaaggtatgaagagttaatgcttgcatttacaatctcttgtctattagctttaggtatgacgggaaggatttgtctgaag 222  Q
    || |||||| || ||  |||| |  ||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||| || || | ||| | |||     
T  11235893 taatacctcgcagaactgccataaatatgaagagttgatgcttgcatttacaacctcttgtctatttgctttaggcatgactgggagtacttgacggaaa 11235794  T
Q  223 tcaccaccaagtaccacaacctttccaccaaaagggatgtctgttcggccattgttttgaacacgaaggatatccctcaagctgcgatctaatgcttcaa 322  Q
    || |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |  || ||||    
T  11235793 tcgccaccaagtaccacaaccttacctccaaaagggatatctgttcggccgttattttggacacgaagaatatctctcaaactgcggtccagcgcctcaa 11235694  T
Q  323 aacagtgtttatgcatcataggtgcttcatcccatataatcagttttgccttacaaaccaattcagctagagggctcttaggatgtattccacatgttga 422  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||  ||||| || |||||||| |||||||||||    
T  11235693 aacagtgtttatgcatcataggtgcttcatcccatataataagttttgccttagaaaccaactcagctaatgggctttttggatgtatcccacatgttga 11235594  T
Q  423 t 423  Q
    |    
T  11235593 t 11235593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 61 - 423
Target Start/End: Original strand, 43192470 - 43192832
Alignment:
Q  61 tttctttcttcaatatcagagctcgaagaaccatgtagaagacgcatgtttgtcgacaatgttagtacctcacaaaatggccaaaggtatgaagagttaa 160  Q
    |||||||| | ||||||||| || ||||||||||||| ||| ||||||||  | |||||||||| |||||| || ||  |||| |  ||||||||||| |    
T  43192470 tttctttcgttaatatcagaacttgaagaaccatgtaaaaggcgcatgttatttgacaatgttaatacctcgcagaactgccataaatatgaagagttga 43192569  T
Q  161 tgcttgcatttacaatctcttgtctattagctttaggtatgacgggaaggatttgtctgaagtcaccaccaagtaccacaacctttccaccaaaagggat 260  Q
    ||||||||||||||| |||||||||||| |||||||| ||||| || || | ||| | ||| || |||||||||||||||||||| || |||||||||||    
T  43192570 tgcttgcatttacaacctcttgtctatttgctttaggcatgactgggagtacttgacggaaatcgccaccaagtaccacaaccttccctccaaaagggat 43192669  T
Q  261 gtctgttcggccattgttttgaacacgaaggatatccctcaagctgcgatctaatgcttcaaaacagtgtttatgcatcataggtgcttcatcccatata 360  Q
     | ||| ||||| || || || |||||||| || || ||||| || || || |  || |||||| ||||||||||||||| ||||| ||||||| |||||    
T  43192670 atatgtccggccgttattatggacacgaagaatttctctcaaactacggtccagcgcctcaaaatagtgtttatgcatcacaggtgtttcatcctatata 43192769  T
Q  361 atcagttttgccttacaaaccaattcagctagagggctcttaggatgtattccacatgttgat 423  Q
    || |||||||||||||||||||| |||||||  ||||| || |||||||| ||||||||||||    
T  43192770 ataagttttgccttacaaaccaactcagctaatgggctttttggatgtatcccacatgttgat 43192832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 154 - 423
Target Start/End: Complemental strand, 11225351 - 11225082
Alignment:
Q  154 gagttaatgcttgcatttacaatctcttgtctattagctttaggtatgacgggaaggatttgtctgaagtcaccaccaagtaccacaacctttccaccaa 253  Q
    ||||| |||||||||||||||| |||||||||||| |||||||| |||||  | || | ||| | ||| || |||||||||||||||||||| || ||||    
T  11225351 gagttgatgcttgcatttacaacctcttgtctatttgctttaggcatgactaggagtacttgacggaaatcgccaccaagtaccacaaccttacctccaa 11225252  T
Q  254 aagggatgtctgttcggccattgttttgaacacgaaggatatccctcaagctgcgatctaatgcttcaaaacagtgtttatgcatcataggtgcttcatc 353  Q
    ||||||| ||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |  || |||||||||||||||||||||||||||||||||||    
T  11225251 aagggatatctgttcggccgttattttggacacgaagaatatctctcaaactgcggtccagcgcctcaaaacagtgtttatgcatcataggtgcttcatc 11225152  T
Q  354 ccatataatcagttttgccttacaaaccaattcagctagagggctcttaggatgtattccacatgttgat 423  Q
     |||||||| |||||||||||| ||||||| |||||||  ||||| || |||||||| ||||||||||||    
T  11225151 tcatataataagttttgccttagaaaccaactcagctaatgggctttttggatgtatcccacatgttgat 11225082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 50939581 - 50939621
Alignment:
Q  334 tgcatcataggtgcttcatcccatataatcagttttgcctt 374  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  50939581 tgcatcataggagcttcatcccatataatgagttttgcctt 50939621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 34707862 - 34707795
Alignment:
Q  322 aaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgccttacaaaccaattcagc 389  Q
    ||||||||||  ||||||||||| ||||| |||||||| || || |||||||||  ||||||||||||    
T  34707862 aaacagtgttggtgcatcataggagcttcgtcccatattataagctttgccttatcaaccaattcagc 34707795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 36896742 - 36896801
Alignment:
Q  316 gcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgcctta 375  Q
    ||||| ||||| |||||||||||||| || |||||||||||||| || ||||| ||||||    
T  36896742 gcttcgaaacaatgtttatgcatcatcggcgcttcatcccatatgataagtttagcctta 36896801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 47741442 - 47741382
Alignment:
Q  13 tcaccaatgctaccatcaccgatacctagcacccactcgctgaattgttttctttcttcaa 73  Q
    ||||||||||| ||||||||||| ||||  | ||| |||||||||||||||||||||||||    
T  47741442 tcaccaatgctcccatcaccgattcctaaaatccagtcgctgaattgttttctttcttcaa 47741382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 23090365 - 23090425
Alignment:
Q  315 tgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgcctta 375  Q
    |||||| ||||| |||||||||||||| || |||||||||||||| || ||||| ||||||    
T  23090365 tgcttcgaaacaatgtttatgcatcatcggcgcttcatcccatatgataagtttagcctta 23090425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 37892624 - 37892684
Alignment:
Q  315 tgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgcctta 375  Q
    |||||| ||||| |||||||||||||| || |||||||||||||| || ||||| ||||||    
T  37892624 tgcttcgaaacaatgtttatgcatcattggcgcttcatcccatatgataagtttagcctta 37892684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 21668614 - 21668657
Alignment:
Q  319 tcaaaacagtgtttatgcatcataggtgcttcatcccatataat 362  Q
    ||||||||||| || |||||||||||||| ||||||||||||||    
T  21668614 tcaaaacagtgcttgtgcatcataggtgcctcatcccatataat 21668657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 41532672 - 41532723
Alignment:
Q  305 tgcgatctaatgcttcaaaacagtgtttatgcatcataggtgcttcatccca 356  Q
    ||||||| | |||||| ||||| |||||||||||||| ||||||||||||||    
T  41532672 tgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatccca 41532723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 371
Target Start/End: Original strand, 30443775 - 30443920
Alignment:
Q  226 ccaccaagtaccacaacctttccaccaaaagggatgtctgttcggccattgttttgaacacgaaggatatccctcaagctgcgatctaatgcttcaaaac 325  Q
    |||||||| |||||||| || ||||||||||| |||||||| |  |  || || ||| |   ||||| |||||| ||| ||||||| |  |||||||| |    
T  30443775 ccaccaagaaccacaactttaccaccaaaaggaatgtctgtcctcctgttattatgatctttaaggacatcccttaaggtgcgatcaagagcttcaaagc 30443874  T
Q  326 agtgtttatgcatcataggtgcttcatcccatataatcagttttgc 371  Q
    | ||||| ||||||||||||||||| ||||| || || ||||||||    
T  30443875 aatgtttgtgcatcataggtgcttcgtcccagatgattagttttgc 30443920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 16969160 - 16969072
Alignment:
Q  166 gcatttacaatctcttgtctattagctttaggtatgacgggaaggatttgtctgaagtcaccaccaagtaccacaacctttccaccaaa 254  Q
    |||| ||||||||| ||||| |||||||| ||||| || || |  |||||||| |||||||||||||  ||||||||||| || |||||    
T  16969160 gcatgtacaatctcctgtctgttagctttcggtataaccggcaaaatttgtctaaagtcaccaccaaagaccacaaccttccctccaaa 16969072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 8162954 - 8162914
Alignment:
Q  316 gcttcaaaacagtgtttatgcatcataggtgcttcatccca 356  Q
    |||||||| || ||||| |||||||||||||||||||||||    
T  8162954 gcttcaaagcaatgtttgtgcatcataggtgcttcatccca 8162914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 25972129 - 25972189
Alignment:
Q  315 tgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgcctta 375  Q
    |||||| ||||| ||||| |||||||| || |||||||||||||| || ||||| ||||||    
T  25972129 tgcttctaaacaatgtttgtgcatcattggcgcttcatcccatatgataagtttagcctta 25972189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 25976569 - 25976629
Alignment:
Q  315 tgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagttttgcctta 375  Q
    |||||| ||||| ||||| |||||||| || |||||||||||||| || ||||| ||||||    
T  25976569 tgcttctaaacaatgtttgtgcatcattggcgcttcatcccatatgataagtttagcctta 25976629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 34418047 - 34418087
Alignment:
Q  334 tgcatcataggtgcttcatcccatataatcagttttgcctt 374  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  34418047 tgcatcataggagcttcatcccatattatgagttttgcctt 34418087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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