View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7823_high_5 (Length: 361)
Name: NF7823_high_5
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_high_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 31699299 - 31698948
Alignment:
| Q |
10 |
agaacctgtgcacaatttctcaataaatttggcatcatccatagattgactagcacatctaaccaaaatggtttggttgaatataaatcgacaaatagta |
109 |
Q |
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| T |
31699299 |
agaacctgtgcacaatttctcaataaatttggcatcatccatagattgactagcacatctaaccaaaatggtttggttgaaaataaattgacaaatagta |
31699200 |
T |
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| Q |
110 |
taaaagggtctaactctacttgcccatccctcctccataccgctttcctaatgggatttcagtttttacattgctgtatacctatcaacagactccgttc |
209 |
Q |
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| T |
31699199 |
taaaagggtctaactctacttgcccatccctcctccataccgctttcctaatgggatttcagtttttgcattgctgtatacctatcaacagactccgttc |
31699100 |
T |
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| Q |
210 |
atctgcaatctaattatattccccatgccacacttaataagttcctaccatacctcataacaaggatttaagaacatcggacatgcttgcttttcatttc |
309 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31699099 |
atcagcaatctaattatattccccatgccacacttaataagttcctaccctacctcataacaaggatttaagaacatcggacatgcttgcttttcatttc |
31699000 |
T |
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| Q |
310 |
tgatgccttacaatcagcctaaaatggatttcagatccaaggagtgtatttt |
361 |
Q |
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| T |
31698999 |
tgatgccttacaatcagcctaaaatggatttcagatccaaggagtgtatttt |
31698948 |
T |
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