View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7823_high_7 (Length: 334)
Name: NF7823_high_7
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 44 - 317
Target Start/End: Complemental strand, 17523131 - 17522855
Alignment:
| Q |
44 |
tccccattattttatcttcttaacatgttgaag-----ttaaaagatctgtcttgttattcctctcatatcaatttcgcttcttgagaaaaacattagtc |
138 |
Q |
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| T |
17523131 |
tccccattattttatcttcttaacattttgaagatgaattaaaagatccgtcttgttcttcctctcttatcaatttcgcttcttgagaaaaacacttgtc |
17523032 |
T |
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| Q |
139 |
aagaccatcttggattgcagagaagccttcagcaacttgattccctgttacaaaatagcacnnnnnnnnngcatataaatctaaaaatacaaatcagaaa |
238 |
Q |
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| T |
17523031 |
aagaccatcttggattgcagagaagccttcagcaacttgattccctgttacaaaaaagcacaaaagaaa--catataaatctaaaagaacaaatcagaaa |
17522934 |
T |
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| Q |
239 |
ttttagacaagactaagtttatttacacattgaatatatactaacctcatccatccccatctcaaccaccgtttcttgc |
317 |
Q |
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| T |
17522933 |
ttttagacatgactgagtttgtttacacattgtatatacactaacctcatccatccccatctcaaccactttttcttgc |
17522855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 17016177 - 17016236
Alignment:
| Q |
117 |
cttcttgagaaaaacattagtcaagaccatcttggattgcagagaagccttcagcaactt |
176 |
Q |
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| T |
17016177 |
cttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactt |
17016236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 17546614 - 17546673
Alignment:
| Q |
117 |
cttcttgagaaaaacattagtcaagaccatcttggattgcagagaagccttcagcaactt |
176 |
Q |
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| T |
17546614 |
cttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactt |
17546673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 52144989 - 52145088
Alignment:
| Q |
94 |
ttattcctctcatatcaatttcgcttcttgagaaaaacattagtcaagaccatcttggattgcagagaagccttcagcaacttgattccctgttacaaaa |
193 |
Q |
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| T |
52144989 |
ttattccttgcatatcaattttccttcttgaggaaaacacttgtcaataccattttggattgcagagaagcctttagcaacttgataccctgttacaaaa |
52145088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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