View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7823_high_8 (Length: 334)
Name: NF7823_high_8
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 43029863 - 43030169
Alignment:
| Q |
14 |
ttggtgttggcattggaattggcattggcaatggcaatgatggtcctaacatcccaggatcttcaggatcatctgtgtcaaatctaaacaatgcctacaa |
113 |
Q |
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| T |
43029863 |
ttggtgttggcattggcattggcattggcaatggcaatgatggtcctaacatcccaggatcttcaggatcatctgtgtcaaatctaaacaatgcctacaa |
43029962 |
T |
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| Q |
114 |
agctcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttcttataaaggaatcttttgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43029963 |
agctcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttcttataaaggaatcttttgt |
43030062 |
T |
|
| Q |
214 |
gacactactagtaatactccttttgttgcaggaatagatctcaaccatgcaaatctccaaggaacacttgttaaagaactctctttactatctgctataa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030063 |
gacactactagtaatactccttttgttgcaggaatagatctcaaccatgcaaatctccaaggaacacttgttaaagaactctctttactatctgctataa |
43030162 |
T |
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| Q |
314 |
cacttct |
320 |
Q |
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||||||| |
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| T |
43030163 |
cacttct |
43030169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 34201790 - 34201693
Alignment:
| Q |
117 |
tcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttcttataaaggaatcttttgtg |
214 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||| ||||| | ||| |||| | ||||| ||||| |||||||||||||| |||| |
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| T |
34201790 |
tcttcaagcatggaaatctgcaatcactgatgaccctttaaagatactagattcttggaatggttcaaatgtatgttcatataaaggaatcttctgtg |
34201693 |
T |
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