View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7823_high_9 (Length: 324)
Name: NF7823_high_9
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 121 - 316
Target Start/End: Complemental strand, 40842529 - 40842334
Alignment:
| Q |
121 |
aaactaaagctacacgttttgcttgtgccttgctcagtcacataggttgcacaatatacctcctaattatttggcttagtggctgcacttgagagaaata |
220 |
Q |
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| T |
40842529 |
aaactaaagctacacgttttgcttgtgccttgctcagtcacgtaggttgcacaatatacctcctaattatttggcttagtggctgcacttgagataaata |
40842430 |
T |
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| Q |
221 |
atagcaacattagtattcaatccactatcaacataacttcccttattttttgtaattagaaacaaaaactgcatcagctaaagtcatagaataata |
316 |
Q |
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| T |
40842429 |
atagcaacattagtattcaatccactatcaacataacttcccttattttttgtaattagaaacaaaaactgcatcagctagagtcatagaagaata |
40842334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 121 - 316
Target Start/End: Complemental strand, 41959347 - 41959150
Alignment:
| Q |
121 |
aaactaaagctacacgttttgcttgtgccttgctcagtcacataggttgcacaatatacctcctaattatttggcttagtggctgcacttgagagaaata |
220 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |
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| T |
41959347 |
aaactaaagctacacgttttgctcgtgccttgctcagtcatataggttgcacaatataccccctaattatttggcttagtggctgaacttgagataaata |
41959248 |
T |
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| Q |
221 |
atagcaacattagtattcaatccactatcaacataacttcccttattttttgtaattagaaaca--aaaactgcatcagctaaagtcatagaataata |
316 |
Q |
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| T |
41959247 |
atagcaacattagtattcaatccactatcaacataacttcccttatttttggtaattagaaacaaaaaaactgcatcagctagagttatagaagaata |
41959150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 42078265 - 42078211
Alignment:
| Q |
179 |
cctcctaattatttggcttagtggctgcacttgagagaaataatagcaacattag |
233 |
Q |
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| T |
42078265 |
cctcctaattatttggcttagtagctgtacttgtgagaaataatggcaacattag |
42078211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 121 - 316
Target Start/End: Original strand, 29586801 - 29586997
Alignment:
| Q |
121 |
aaactaaagctacacgttttgcttgtgccttgctcagtcacataggttgcacaatatacctcctaattatttggcttagtggctgcacttgagag-aaat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
29586801 |
aaactaaagctacacgttttgcttgtgccttgctcagtcacataggttgcacaatatacttcctaattatttggcttagtggctgcacttgagagaaaat |
29586900 |
T |
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| Q |
220 |
aatagcaacattagtattcaatccactatcaacataacttcccttattttttgtaattagaaacaaaaactgcatcagctaaagtcatagaataata |
316 |
Q |
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| T |
29586901 |
aatagcaacattagtattcaatccactatcaacataacttcccttatttttggtaattagaaacaaaaactgcatcagctagagtcatagaagaata |
29586997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 121 - 287
Target Start/End: Original strand, 9992432 - 9992598
Alignment:
| Q |
121 |
aaactaaagctacacgttttgcttgtgccttgctcagtcacataggttgcacaatatacctcctaattatttggcttagtggctgcacttgagagaaata |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9992432 |
aaactaaagctacacgttttgcttgtgccttgctcagtcacataggttgcacaatatacctcctaattatttggcttagtggctgcacttgagagaaata |
9992531 |
T |
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| Q |
221 |
atagcaacattagtattcaatccactatcaacataacttcccttattttttgtaattagaaacaaaa |
287 |
Q |
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| T |
9992532 |
atagcaacattagtattcaatccactatcaacataagttcccttatttttggtaattagaaacaaaa |
9992598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 41943835 - 41943780
Alignment:
| Q |
179 |
cctcctaattatttggcttagtggctgcac-ttgagagaaataatagcaacattag |
233 |
Q |
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||||||||||||||||||||||||||| || ||| |||||||||| |||||||||| |
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| T |
41943835 |
cctcctaattatttggcttagtggctgtacattgtgagaaataatggcaacattag |
41943780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 10345467 - 10345414
Alignment:
| Q |
179 |
cctcctaattatttggcttagtggctgcacttgagagaaataatagcaacattag |
233 |
Q |
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||||||||||||| ||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
10345467 |
cctcctaattatt-ggcttagtggctgtacttgtgagaaataatggcaacattag |
10345414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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