View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7823_low_1 (Length: 861)

Name: NF7823_low_1
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7823_low_1
NF7823_low_1
[»] chr5 (16 HSPs)
chr5 (239-494)||(14354618-14354867)
chr5 (626-848)||(14354410-14354619)
chr5 (15-197)||(25897777-25897959)
chr5 (15-197)||(42393886-42394068)
chr5 (15-197)||(13946235-13946416)
chr5 (15-197)||(22213434-22213617)
chr5 (67-197)||(30493751-30493881)
chr5 (67-197)||(30534094-30534224)
chr5 (67-197)||(26674261-26674391)
chr5 (67-197)||(26945867-26945997)
chr5 (79-197)||(36275733-36275850)
chr5 (26-197)||(11741987-11742161)
chr5 (132-194)||(28611980-28612042)
chr5 (132-197)||(42644861-42644926)
chr5 (15-50)||(30493884-30493919)
chr5 (15-50)||(30534227-30534262)
[»] chr8 (18 HSPs)
chr8 (15-197)||(18916001-18916183)
chr8 (15-197)||(38526650-38526832)
chr8 (15-197)||(41486637-41486819)
chr8 (15-197)||(2001475-2001657)
chr8 (38-197)||(9686520-9686679)
chr8 (15-197)||(1197409-1197590)
chr8 (39-197)||(11661160-11661318)
chr8 (67-197)||(2735056-2735186)
chr8 (67-197)||(35563604-35563734)
chr8 (67-197)||(24697751-24697880)
chr8 (88-197)||(38567017-38567126)
chr8 (13-98)||(43596262-43596347)
chr8 (13-83)||(43596013-43596083)
chr8 (13-50)||(24697711-24697748)
chr8 (15-50)||(2735018-2735053)
chr8 (15-50)||(35563737-35563772)
chr8 (15-58)||(38567513-38567556)
chr8 (132-165)||(43595900-43595933)
[»] chr7 (12 HSPs)
chr7 (15-197)||(47266417-47266599)
chr7 (15-197)||(20372297-20372479)
chr7 (15-197)||(44080005-44080187)
chr7 (15-197)||(30586228-30586396)
chr7 (67-197)||(49141816-49141946)
chr7 (13-197)||(22916536-22916720)
chr7 (13-191)||(43174989-43175167)
chr7 (15-197)||(41743289-41743456)
chr7 (67-197)||(31293229-31293358)
chr7 (67-186)||(8047721-8047840)
chr7 (132-194)||(27619952-27620014)
chr7 (15-50)||(31293191-31293226)
[»] chr2 (8 HSPs)
chr2 (15-197)||(5614395-5614577)
chr2 (15-197)||(15805612-15805794)
chr2 (15-197)||(32597523-32597705)
chr2 (15-197)||(27641193-27641375)
chr2 (15-160)||(30518619-30518763)
chr2 (132-197)||(34580248-34580313)
chr2 (153-197)||(30522755-30522799)
chr2 (67-124)||(36871212-36871269)
[»] chr3 (19 HSPs)
chr3 (15-197)||(11685602-11685784)
chr3 (15-197)||(41958145-41958327)
chr3 (15-197)||(53151393-53151575)
chr3 (15-197)||(8082202-8082384)
chr3 (15-197)||(3777425-3777607)
chr3 (15-197)||(18996740-18996922)
chr3 (15-197)||(18999279-18999461)
chr3 (15-197)||(28246725-28246906)
chr3 (15-197)||(37608954-37609135)
chr3 (15-152)||(13696562-13696699)
chr3 (15-197)||(24373236-24373404)
chr3 (67-197)||(30260895-30261025)
chr3 (15-197)||(45572825-45572991)
chr3 (68-197)||(30800876-30801006)
chr3 (36-163)||(20329460-20329595)
chr3 (14-103)||(20307462-20307550)
chr3 (85-194)||(54162721-54162830)
chr3 (132-179)||(41296003-41296050)
chr3 (19-81)||(41295901-41295963)
[»] chr4 (18 HSPs)
chr4 (15-197)||(44506284-44506466)
chr4 (15-197)||(29051814-29051997)
chr4 (15-197)||(9033817-9033999)
chr4 (15-197)||(39502759-39502940)
chr4 (15-197)||(37995618-37995799)
chr4 (15-197)||(56080766-56080948)
chr4 (15-197)||(26695994-26696177)
chr4 (15-197)||(40590918-40591100)
chr4 (67-197)||(24072596-24072726)
chr4 (53-190)||(2623152-2623289)
chr4 (13-186)||(45620195-45620367)
chr4 (67-197)||(127813-127943)
chr4 (13-180)||(51789986-51790153)
chr4 (15-115)||(31334993-31335093)
chr4 (132-197)||(22602386-22602451)
chr4 (15-57)||(39499420-39499462)
chr4 (54-114)||(54230924-54230984)
chr4 (15-50)||(24072558-24072593)
[»] chr1 (18 HSPs)
chr1 (15-197)||(21620209-21620391)
chr1 (15-197)||(19565334-19565515)
chr1 (15-197)||(40125581-40125763)
chr1 (15-197)||(45360340-45360522)
chr1 (15-197)||(5555362-5555544)
chr1 (44-197)||(25473684-25473837)
chr1 (67-197)||(14236598-14236728)
chr1 (67-197)||(3656722-3656852)
chr1 (67-197)||(43068885-43069014)
chr1 (79-197)||(32550239-32550357)
chr1 (67-197)||(4643792-4643921)
chr1 (15-197)||(25304163-25304345)
chr1 (54-193)||(16296612-16296751)
chr1 (68-197)||(6693892-6694021)
chr1 (135-179)||(35371574-35371618)
chr1 (13-50)||(4643752-4643789)
chr1 (15-50)||(14236560-14236595)
chr1 (15-50)||(43069017-43069052)
[»] chr6 (3 HSPs)
chr6 (15-186)||(24765370-24765539)
chr6 (15-114)||(4653742-4653841)
chr6 (67-176)||(33756598-33756709)
[»] scaffold0051 (2 HSPs)
scaffold0051 (67-197)||(59224-59354)
scaffold0051 (15-50)||(59186-59221)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 239 - 494
Target Start/End: Complemental strand, 14354867 - 14354618
Alignment:
Q  239 tacatgtgattggctatttatcatcattagtggggtgatatgagacttagttacaaaacctgatctgcaatttgctttttaactcacaaaacaacactca 338  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14354867 tacatgtgattggctatttatcatcattagtggggtgatatga--cttagttacaaaacctaatctgcaatttgctttttaactcacaaaacaacactca 14354770  T
Q  339 taaaatttcccgaacaatatttcgctacatatagcattgttgatacatacattatttagtagttatggaatgttttgattaatgcataaccgcaacctat 438  Q
    | |||||||| ||||||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| || ||||    
T  14354769 tgaaatttccagaacaatattttgctacatatagcattgttgatacat----tatttagtagttatggaatgttttgattaatgcataaccgtaatctat 14354674  T
Q  439 aacacgacattcgtaacagtcaaaatcgtaaaatcatacatatatgtgacaacgat 494  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  14354673 aacacgacattcgtaacagtcaaaatcgtgaaatcctacatatatgcgacaacgat 14354618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 626 - 848
Target Start/End: Complemental strand, 14354619 - 14354410
Alignment:
Q  626 attattatatataacaaatacatataacaaatggccaacacaacacaatgtctttattgatcagaannnnnnn-gttgacaatcttctgaagagaattat 724  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  14354619 attattatatataacaaatacatataacaaatggccaacacaacacaatgtctttattgatcagaattttttttgttgacaatcttctgaagagaattat 14354520  T
Q  725 tgcatatatatagatatgcatagaaacatataagtcattacttattatt-actagttaaagggaaaaggcttcttcaatagataatattgattaattatg 823  Q
                   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14354519 ---------------atgcatagaaacatataagtcattacttattatttactagttaaagggaaaaggcttcttcaatagataatattaattaattatg 14354435  T
Q  824 aaaattaaaaatttggttgatgtcc 848  Q
    |||||||||| ||||||||||||||    
T  14354434 aaaattaaaagtttggttgatgtcc 14354410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 25897959 - 25897777
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| |||||||||| || |||||| ||| ||| ||||||||||||||||  |||||||||||||||| |||||||||||||    
T  25897959 aatatcatgggaatgcacattcccatctctttatatgggaatatattcatgggaataatggaagttataggaagttactccattcctaggaacctttata 25897860  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  25897859 cccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccgggaatgtcattctt 25897777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 42394068 - 42393886
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||| ||||||||| |||||||||  |||||||||||||||||||    
T  42394068 aatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataattgaagttatgggaagttacttaattcccaggaacctttata 42393969  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    ||||||||||       ||||||||||||| ||||||||||||||||||||  ||||||||||||| ||| ||||||||||||    
T  42393968 ctcaggaatatttttttctcaacctcataataaacatgggtataatcattccctagccatgtattctcgggaatgtcattctt 42393886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 13946416 - 13946235
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||  |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  13946416 aatatcatgggaatgcacattctcatctctttacatgggaataaattcatggaaataatggaagttatgggaagttactccattctcaggaacctttata 13946317  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |  |||||||       |||||||||||||||||||| | |||||||||||  ||||||||||||| ||| ||||||||||||    
T  13946316 cctaggaatatttttttctcaacctcataacaaacat-gatataatcattccctagccatgtattctcgggaatgtcattctt 13946235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 22213434 - 22213617
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||| ||||||||| |||||| ||| ||| ||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  22213434 aatatcatgggaatgcacattcccatatctttacatgggaatatattcatgggaataatggaaattataggaagttactccattcccaggaacctttata 22213533  T
Q  115 ctcagg-aatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | |||| ||||       |||||||||||||||||||||| |||||||||||  || |||||||||||||| ||||||||||||    
T  22213534 cccaggaaatatttttttctcaacctcataacaaacatggatataatcattccctaaccatgtattcccgggaatgtcattctt 22213617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 30493881 - 30493751
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||       ||||||||||||||||||||||||||||||||||     
T  30493881 gaataatggaagttatgggaagttactccattcccaggaatctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattcc 30493782  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     ||||||||||||||||| ||||||||||||    
T  30493781 ctagccatgtattcccgggaatgtcattctt 30493751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 30534224 - 30534094
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||       ||||||||||||||||||||||||||||||||||     
T  30534224 gaataatggaagttatgggaagttactccattcccaggaatctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattcc 30534125  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     ||||||||||||||||| ||||||||||||    
T  30534124 ctagccatgtattcccgggaatgtcattctt 30534094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 26674261 - 26674391
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||       ||||| ||||||||||||||||||||||||||||     
T  26674261 gaataatggaagttatgggaagttactccattcctaggaacctttatacccaggaatatttttttctcaatctcataacaaacatgggtataatcattcc 26674360  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     ||||||||||||||||| ||||||||||||    
T  26674361 ctagccatgtattcccgggaatgtcattctt 26674391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 26945867 - 26945997
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||       ||||| ||||||||||||||||||||||||||||     
T  26945867 gaataatggaagttatgggaagttactccattcctaggaacctttatacccaggaatatttttttctcaatctcataacaaacatgggtataatcattcc 26945966  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     ||||||||||||||||| ||||||||||||    
T  26945967 ctagccatgtattcccgggaatgtcattctt 26945997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 36275733 - 36275850
Alignment:
Q  79 ttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtat 178  Q
    ||||| |||||||||||||||| |||||||||||||| ||||||||       ||||||||||||||||||||| ||||||||||||  |||| ||||||    
T  36275733 ttatgggaagttactccattccgaggaacctttatacccaggaatatttttt-ctcaacctcataacaaacatgtgtataatcattccctagctatgtat 36275831  T
Q  179 tcccggaaatgtcattctt 197  Q
    | | |||||||||||||||    
T  36275832 ttcaggaaatgtcattctt 36275850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 11741987 - 11742161
Alignment:
Q  26 aatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaaccttt-atactcaggaata 124  Q
    |||||||||||  | |||||| | | |||||||||| || ||||||| ||||||||||  |||||||| |||||||| ||| |||| |||| ||||||||    
T  11741987 aatgcacattccaacctcttttcttgggaataaattcatttgaataagggaagttatga-aagttacttcattcccatgaatcttttatacccaggaata 11742085  T
Q  125 nnnnnnnctcaacctcataacaaacatgggtataatcattctgtagc----catgtattcccggaaatgtcattctt 197  Q
           ||||||||||||||||||||||||||||||||||  ||||    |||||||||| |||||||||||||||    
T  11742086 tttttt-ctcaacctcataacaaacatgggtataatcattccctagccatgcatgtattcctggaaatgtcattctt 11742161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 28611980 - 28612042
Alignment:
Q  132 ctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcatt 194  Q
    |||||||||| | |||||||||||||||||||||  ||||||||||||| || ||||||||||    
T  28611980 ctcaacctcacagcaaacatgggtataatcattccctagccatgtattctcgaaaatgtcatt 28612042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 42644926 - 42644861
Alignment:
Q  132 ctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    ||||||||||||| ||||||||||||||||||||| || |||||||||| |   ||||||||||||    
T  42644926 ctcaacctcataataaacatgggtataatcattctctacccatgtattctcaagaatgtcattctt 42644861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 30493919 - 30493884
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacat 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  30493919 aatatcatgggaatgcacattcccatctctttacat 30493884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 30534262 - 30534227
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacat 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  30534262 aatatcatgggaatgcacattcccatctctttacat 30534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 2e-64; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 18916183 - 18916001
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18916183 aatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 18916084  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||| ||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  18916083 cccagaaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccggaaatgtcattctt 18916001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 38526650 - 38526832
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38526650 aatatcatgggaatgcacattctcatctctttacatgagaataaattcatgggaataatggaagttatgagaagttactccattcccaggaacctttata 38526749  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |  || ||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||    
T  38526750 cctagaaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattccgagaaatgtcattctt 38526832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 41486637 - 41486819
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||| |||||||||  ||||||||| ||| ||||||||||||||||| || |||||||||||||||||||||||||||    
T  41486637 aatatcatgggaatgcacattcccatatctttacatgagaataaattcatgggaataatggaagttatgggaggttactccattcccaggaacctttata 41486736  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  41486737 cccaggaatatttttttctcaacctcataacaaacatgggtataatcattccttagccatgtattcccgggaatgtcattctt 41486819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 2001475 - 2001657
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    ||||||||| |||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||    
T  2001475 aatatcatgagaatgcacattctcatatcttttcatgggaataaatttatgggaataatggaagttatgagaagttactccattcctaggaacctttata 2001574  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
     |||||||||       ||||||||| ||||||||||||||||||||||||  ||||||| ||||||||  ||||||||||||    
T  2001575 ttcaggaatatttttttctcaacctcgtaacaaacatgggtataatcattccctagccatatattcccgcgaatgtcattctt 2001657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 9686520 - 9686679
Alignment:
Q  38 catctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaac 137  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||       ||||||    
T  9686520 catctctttacataggaataaattcatgggaataatggaagttatgggaagttactccattcccaggaacctttatactcaagaatatttttttctcaac 9686619  T
Q  138 ctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    ||||||||||||||||||||||| ||||  |||||||||||| |||| ||||||||||||    
T  9686620 ctcataacaaacatgggtataattattccctagccatgtatttccgggaatgtcattctt 9686679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 1197590 - 1197409
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||| ||| ||| ||| ||||||||| |||||||||||||||||| |||||||||||    
T  1197590 aatatcatgggaatgcacattcccatctctttacatgagaataaattcatg-gaaaaatagaagttatgggaagttactccattcccaagaacctttata 1197492  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       |||||||||||||||||||||| |||||||||||  ||||||||||||||| | ||||||||||||    
T  1197491 cccaggaatatttttttctcaacctcataacaaacatggatataatcattccctagccatgtattcccaggaatgtcattctt 1197409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 11661318 - 11661160
Alignment:
Q  39 atctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacc 138  Q
    |||| ||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||       |||||||    
T  11661318 atctatttacatgggaataaattcatgggaataatggaagttatgggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacc 11661219  T
Q  139 tcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |||||||||||||||||||||||||||  |||||||||||| |||| ||||||||||||    
T  11661218 tcataacaaacatgggtataatcattccctagccatgtatttccgggaatgtcattctt 11661160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 2735056 - 2735186
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||     
T  2735056 gaataatggaagttatgggaagttactcaattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattcc 2735155  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     |||||||||||||| || ||||||||||||    
T  2735156 ctagccatgtattcctgggaatgtcattctt 2735186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 35563734 - 35563604
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||        ||||| ||||||||||||||||||||||||||||     
T  35563734 gaataatggaagttatgggaaattactccattcccaggaacctttatacccatgaatttttttttctcaagctcataacaaacatgggtataatcattcc 35563635  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     ||  ||||||||||||||||| ||||||||    
T  35563634 ctaatcatgtattcccggaaatatcattctt 35563604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 24697751 - 24697880
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||| ||||||||| ||||||||| |||||||| |||||||||| | || |||||       ||| ||||||||||||||||||||||||||||||     
T  24697751 gaataatcgaagttatgggaagttacttcattcccaagaacctttatgc-catgaatatatttttctctacctcataacaaacatgggtataatcattcc 24697849  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     ||||||||||||||| ||||||||||||||    
T  24697850 ctagccatgtattcccagaaatgtcattctt 24697880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 38567126 - 38567017
Alignment:
Q  88 gttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaa 187  Q
    |||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||||| ||||||||| |  |||||||||||| |||| ||    
T  38567126 gttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatggatataatcatcccctagccatgtatttccgggaa 38567027  T
Q  188 tgtcattctt 197  Q
    ||||||||||    
T  38567026 tgtcattctt 38567017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 43596262 - 43596347
Alignment:
Q  13 agaatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccatt 98  Q
    ||||||| | |||||||||||||| || |||||||||   ||||||||| ||| ||||||||||||||||| |||| |||| ||||    
T  43596262 agaatattacgggaatgcacattcccaactctttacacgagaataaattcatgggaataatggaagttatgagaagatacttcatt 43596347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 43596083 - 43596013
Alignment:
Q  13 agaatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatg 83  Q
    |||||||||||| ||| |||||||||| ||  |||||| |||||||||||||| ||||||  |||||||||    
T  43596083 agaatatcatggaaatccacattctcaacttcttacatgggaataaatttatgagaataagagaagttatg 43596013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 24697711 - 24697748
Alignment:
Q  13 agaatatcatgggaatgcacattctcatctctttacat 50  Q
    |||||||||||||||||||||||| |||||||||||||    
T  24697711 agaatatcatgggaatgcacattcacatctctttacat 24697748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 2735018 - 2735053
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacat 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  2735018 aatatcatgggaatgcacattcccatctctttacat 2735053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 35563772 - 35563737
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacat 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  35563772 aatatcatgggaatgcacattcccatctctttacat 35563737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 38567556 - 38567513
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataa 58  Q
    |||||||||||||||||||| | ||||||||||||| |||||||    
T  38567556 aatatcatgggaatgcacatccccatctctttacatgggaataa 38567513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 43595933 - 43595900
Alignment:
Q  132 ctcaacctcataacaaacatgggtataatcattc 165  Q
    ||||||||||||||||||| ||||||||||||||    
T  43595933 ctcaacctcataacaaacacgggtataatcattc 43595900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 4e-62; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 47266417 - 47266599
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||| || |||||||||||||||||||||||||||    
T  47266417 aatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgggaggttactccattcccaggaacctttata 47266516  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  47266517 cccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccgggaatgtcattctt 47266599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 20372479 - 20372297
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  20372479 aatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgggaagttactcaattcccaggaacctttata 20372380  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |||||||||    
T  20372379 cccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccgggaaagtcattctt 20372297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 44080005 - 44080187
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| | ||||||||||| | |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  44080005 aatatcatgggaatgcacattcccgtctctttacatggaaataaatttatgggaataatgaaagttatgggaagttactccattcccaggaacctttata 44080104  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
      ||||||||       |||||||||||||||||||||| |||||||||||  || |||||||||||||| ||||||||||||    
T  44080105 tccaggaatatatttttctcaacctcataacaaacatggatataatcattccctaaccatgtattcccgggaatgtcattctt 44080187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 30586228 - 30586396
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||              ||||||||||| ||||||||||||||||||||||||||||||    
T  30586228 aatatcatgggaatgcacattctcatctctttacatgggaataa--------------tggaagttatgagaagttactccattcccaggaacctttata 30586313  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  30586314 cccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagtcatgtattcccggaaatgtcattctt 30586396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 49141946 - 49141816
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||     
T  49141946 gaataatggaagttatgggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattcc 49141847  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     ||||||||||||||||| ||||||||||||    
T  49141846 ttagccatgtattcccgggaatgtcattctt 49141816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 22916720 - 22916536
Alignment:
Q  13 agaatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaaccttt- 111  Q
    |||||||||||||||||||||||| || || ||||||| ||||| |||| ||| |||||| ||||||| ||  |||||| | |||||| ||||| ||||     
T  22916720 agaatatcatgggaatgcacattcccaactttttacatgggaatcaattcatgggaataagggaagttctggaaagttatttcattcctaggaatctttt 22916621  T
Q  112 atactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    ||||  |||||||       ||||||||||||||||||||| ||||||||||||| || |||||||||||| ||||||||||||||    
T  22916620 atacctaggaataattttt-ctcaacctcataacaaacatgagtataatcattctctaaccatgtattcccagaaatgtcattctt 22916536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 43174989 - 43175167
Alignment:
Q  13 agaatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaaccttta 112  Q
    |||||||||||| ||||||||||| |||||||||| ||||||| ||||| ||| ||||| || ||||||||  |||||||| ||||||||||||||||||    
T  43174989 agaatatcatggaaatgcacattcccatctctttatataggaaaaaattaatgggaatattgaaagttatggaaagttacttcattcccaggaaccttta 43175088  T
Q  113 tactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtc 191  Q
    ||   |  ||||       ||||| ||||||||||||||||||||| |||||   || ||||||||| ||| |||||||    
T  43175089 tatctaaaaatatttttttctcaatctcataacaaacatgggtatagtcatttcctaaccatgtatttccgaaaatgtc 43175167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 41743289 - 41743456
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacatagg--aataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaaccttta 112  Q
    |||||||||||||||||||||| |||||||||| ||| |  |||||||| ||  ||||||||||||||||| ||||||||| ||||||||||||  |||     
T  41743289 aatatcatgggaatgcacattcccatctctttatatatgtgaataaattcataggaataatggaagttatgggaagttacttcattcccaggaatatttt 41743388  T
Q  113 tactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |                  ||||||||||||||||||||| ||||||||||||  ||||||||||||| ||||||||||||||||    
T  41743389 t-----------------tctcaacctcataacaaacatgtgtataatcattccctagccatgtattctcggaaatgtcattctt 41743456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 31293229 - 31293358
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||  | |||||       ||||||||| ||||||||||| |||| |||||||     
T  31293229 gaataatggaagttatgggaagttactccattctcatgaacctttataccgaagaatatttttttctcaacctcgtaacaaacatgagtat-atcattcc 31293327  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     |||||||||||| ||| |||||||||||||    
T  31293328 ctagccatgtatttccgaaaatgtcattctt 31293358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 186
Target Start/End: Complemental strand, 8047840 - 8047721
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    |||||| |||||||||| ||||||||| |||| ||| ||||||| ||||  |  ||||       |||||||||||||||||||||  || |||||||||    
T  8047840 gaataaaggaagttatgagaagttacttcatttccaagaaccttcatacctaaaaatatttttttctcaacctcataacaaacatgaatacaatcattct 8047741  T
Q  167 gtagccatgtattcccggaa 186  Q
     || ||||||||| ||||||    
T  8047740 ctaaccatgtatttccggaa 8047721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 27620014 - 27619952
Alignment:
Q  132 ctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcatt 194  Q
    |||| ||||||||||||||||| || ||||||||| || |||||||||||  |||||||||||    
T  27620014 ctcatcctcataacaaacatggatacaatcattctctaaccatgtattcctagaaatgtcatt 27619952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 31293191 - 31293226
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacat 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  31293191 aatatcatgggaatgcacattcccatctctttacat 31293226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 4e-62; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 5614577 - 5614395
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5614577 aatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 5614478  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | || |||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  5614477 cccaagaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccgggaatgtcattctt 5614395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 15805794 - 15805612
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| |||||||||||||  ||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15805794 aatatcatgggaatgcacattcccatctctttacatgagaatatattcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 15805695  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  15805694 cccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccggaaatgtcattctt 15805612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 32597523 - 32597705
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  32597523 aatatcatgggaatgcacattcccatctctttacatgagaataaattcatgggaataatggaagttatgggaagttactccattctcaggaacctttata 32597622  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  32597623 cccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccggaaatgtcattctt 32597705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 27641193 - 27641375
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| |||  |||||||||||||||| |||||||||||||||||||||| |||||||    
T  27641193 aatatcatgggaatgcacattctcatctctttacatgagaataaattcatggaaataatggaagttatgggaagttactccattcccaggaatctttata 27641292  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||| ||||       ||||||||||||||||||||||||||||| ||||  ||| ||||||||||||| ||||||||||||    
T  27641293 cccagaaatatttttttctcaacctcataacaaacatgggtataattattccctagtcatgtattcccgggaatgtcattctt 27641375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 30518619 - 30518763
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  30518619 aatatcatgggaatgcacattcccatctctttacatgagaataaattcatgggaataatggaagttatgggaagttactcaattcccaggaacctttata 30518718  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataat 160  Q
    | ||||||||       |||||||||||||||||||||||||||||    
T  30518719 cccaggaata-ttttttctcaacctcataacaaacatgggtataat 30518763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 34580248 - 34580313
Alignment:
Q  132 ctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    ||||| ||||||||||||||||||||||||||||  || |||||||||||||| ||||||||||||    
T  34580248 ctcaatctcataacaaacatgggtataatcattccctaaccatgtattcccgggaatgtcattctt 34580313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 30522755 - 30522799
Alignment:
Q  153 ggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||    
T  30522755 ggtataatcattccctagccatgtattcccgggaatgtcattctt 30522799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 36871212 - 36871269
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaata 124  Q
    ||||| ||||||||||| ||||||| || ||||||| ||||||| |||| ||||||||    
T  36871212 gaatattggaagttatgggaagttattctattcccaagaaccttcatacccaggaata 36871269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 9e-60; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 11685784 - 11685602
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11685784 aatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgagaagttactccattcccaggaacctttata 11685685  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||||||||||| ||||  ||||||||||||||||  ||||||||||||    
T  11685684 cccaggaatatttttttctcaacctcataacaaacatgggtataattattccttagccatgtattcccgataatgtcattctt 11685602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 41958145 - 41958327
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41958145 aatatcatgggaatgcacattcccatctctttacatgggaatatattcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 41958244  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       |||||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||    
T  41958245 cccaggaatatttttttctcaacctcataacaaacatggatataatcattccctagccatgtattcccgggaatgtcattctt 41958327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 53151575 - 53151393
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  53151575 aatatcatgggaatgcacattctcatctctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattctcaggaacctttata 53151476  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |  |||||||       |||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  53151475 cctaggaatatttttttctcaacctgataacaaacatgggtataatcattccctagccatgtattcccgggaatgtcattctt 53151393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 8082384 - 8082202
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8082384 aatatcatgggaatgcacattcccatctctttacatgggaatatattcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 8082285  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||| |||| |||||||||||  ||||||||||||||||| ||||||||||||    
T  8082284 cccaggaatatttttttctcaacctcataacaaaaatggatataatcattccctagccatgtattcccgggaatgtcattctt 8082202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 3777425 - 3777607
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||| ||| ||||||||||||||||| || |||||||||||| || |||||||||||    
T  3777425 aatatcatgggaatgcacatttccatctctttacatgggaataaattcatgggaataatggaagttatgggaggttactccattctcaagaacctttata 3777524  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |  |||||||       ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  3777525 cctaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattctcggaaatgtcattctt 3777607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 18996740 - 18996922
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||  |||| |||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18996740 aatatcatgggaatgcacatttccatccctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 18996839  T
Q  115 ctcaggaata-nnnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||        |||||||||||||| |||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  18996840 cccaggaatatttttttcctcaacctcataac-aacatgggtataatcattccctagccatgtattcccgggaatgtcattctt 18996922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 18999279 - 18999461
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||  |||| |||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18999279 aatatcatgggaatgcacatttccatccctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 18999378  T
Q  115 ctcaggaata-nnnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||        |||||||||||||| |||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  18999379 cccaggaatatttttttcctcaacctcataac-aacatgggtataatcattccctagccatgtattcccgggaatgtcattctt 18999461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 28246906 - 28246725
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||||||| |||||| || |||||||||| ||| | ||||||||||||||| |||||||||||||||||| |||||||||||    
T  28246906 aatatcatgggaatgcacattctcatatctttatatgggaataaattcatg-gcataatggaagttatgagaagttactccattcccatgaacctttata 28246808  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
       |||||||       ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  28246807 tctaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagtcatgtattcccggaaatgtcattctt 28246725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 37609135 - 37608954
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||  |||| |||||||||||||||||||| ||||||| |||||| ||||||||||||| ||| |||||||||| |||||||| ||||||||||    
T  37609135 aatatcatgataatgtacattctcatctctttacatgggaataagtttatgggaataatggaagtcatgggaagttactctattcccagaaacctttata 37609036  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       |||||||||||||||||||||||| |||||||||  || |||||||||||||||||| || |||||    
T  37609035 c-caggaatatttttttctcaacctcataacaaacatgggtctaatcattccctaaccatgtattcccggaaatatcgttctt 37608954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 13696699 - 13696562
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13696699 aatatcatgggaatgcacattcccatctctttacatgggaataagttcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 13696600  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatg 152  Q
    | ||||||||       |||||||||||||||||||||    
T  13696599 cccaggaatatttttttctcaacctcataacaaacatg 13696562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 24373236 - 24373404
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||              || |||||||| || |||||||||||||||||||||||||||    
T  24373236 aatatcatgggaatgcacattctcatctctttacatgggaataa--------------tgaaagttatgggaggttactccattcccaggaacctttata 24373321  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  24373322 cccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccgggaatgtcattctt 24373404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 30260895 - 30261025
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||     
T  30260895 gaataatggaagttatgggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattcc 30260994  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     |||||||||||| || | ||||||||||||    
T  30260995 ctagccatgtatttccaggaatgtcattctt 30261025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 45572825 - 45572991
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||  ||| |     
T  45572825 aatatcatgggaatgcacattcccatctctttacatgggaatatattcatgagaataatggaagttatgggaagttactccattcccaggaatattttt- 45572923  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
                     ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  45572924 ---------------ttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccgggaatgtcattctt 45572991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 30801006 - 30800876
Alignment:
Q  68 aataatggaagttatgtgaagttactccattcccaggaacctttatac-tcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| | | |||||       ||||||||||||||||||||||||||||||||||     
T  30801006 aataatggaagttatgagaagttactccattcccagtaacctttatacctaaagaatatttttttctcaacctcataacaaacatgggtataatcattcc 30800907  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     |||||||||||||||| |||||||||||||    
T  30800906 ctagccatgtattcccgaaaatgtcattctt 30800876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 20329460 - 20329595
Alignment:
Q  36 ctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattccc---------aggaacctttatactcaggaatann 126  Q
    ||||||||||||||| |||||||||||||  |||||||| |||||||| ||||||||| |||||||         |||||||||||||| ||||||||      
T  20329460 ctcatctctttacatgggaataaatttataggaataatgaaagttatgggaagttacttcattcccaagaaacctaggaacctttatac-caggaatatt 20329558  T
Q  127 nnnnnctcaacctcataacaaacatgggtataatcat 163  Q
         ||||||||||||||||||||| ||||||||||    
T  20329559 tttttctcaacctcataacaaacatgagtataatcat 20329595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 20307462 - 20307550
Alignment:
Q  14 gaatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccag 103  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||| ||  |||||||| |||||||| || |||||| |||||||||    
T  20307462 gaatattatgggaatgcacattctcatctctttacatgagaataaattcataggaataatgaaagttatg-gacgttacttcattcccag 20307550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 54162830 - 54162721
Alignment:
Q  85 gaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccgg 184  Q
    ||||||||| ||||||||||||||||| |||  |||||||       ||| |||| |||||||||||||||||||||||||  || ||||| |||||| |    
T  54162830 gaagttacttcattcccaggaacctttgtacctaggaatatttttttctcgaccttataacaaacatgggtataatcattccctaaccatggattcccag 54162731  T
Q  185 aaatgtcatt 194  Q
     |||||||||    
T  54162730 gaatgtcatt 54162721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 41296003 - 41296050
Alignment:
Q  132 ctcaacctcataacaaacatgggtataatcattctgtagccatgtatt 179  Q
    |||||||| |||||||||||| ||||||||||||| ||| ||||||||    
T  41296003 ctcaaccttataacaaacatgagtataatcattctctagtcatgtatt 41296050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 41295901 - 41295963
Alignment:
Q  19 tcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagtta 81  Q
    |||| |||||||||||||||| ||  ||||||||||||||||| |||  | ||||||||||||    
T  41295901 tcataggaatgcacattctcaccttcttacataggaataaattcatgatattaatggaagtta 41295963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 44506284 - 44506466
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| |||||||||||||  ||||| ||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  44506284 aatatcatgggaatgcacattcccatctctttacatgagaatatatttatgggaataatggaagttatgggaagttactccattcccaagaacctttata 44506383  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | || |||||       ||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  44506384 cccaagaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccgaaaatgtcattctt 44506466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 29051997 - 29051814
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaattt-atgtgaataatggaagttatgtgaagttactccattcccaggaacctttat 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||| |||||||||||||||||| |||| |||||    
T  29051997 aatatcatgggaatgcacattctcatctctttacatgggaataaaattcatgggaataatggaagttatgagaagttactccattcccatgaacttttat 29051898  T
Q  114 actcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    || ||||||||       ||||||||||||||||| ||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  29051897 acccaggaatatttttttctcaacctcataacaaatatgggtataatcattccctagccatgtattcccgggaatgtcattctt 29051814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 9033999 - 9033817
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| |||||||||||||  ||||| ||| ||| |||||||||||||||||  |||||||||||||||||||||||||||||    
T  9033999 aatatcatgggaatgcacattcccatctctttacatgagaatatattcatgggaataatggaagttatggaaagttactccattcccaggaacctttata 9033900  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||| ||||||||||||  || ||||||||||| || ||||||||||||    
T  9033899 cccaggaatatttttttctcaacctcataacaaacatgagtataatcattccctaaccatgtattcctgggaatgtcattctt 9033817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 39502759 - 39502940
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39502759 aatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 39502858  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |  ||||||        |||||||||||||||||||||| |||||||||||  ||  ||||||||||||| ||||||||||||    
T  39502859 cctaggaat-tttttttctcaacctcataacaaacatggatataatcattccctaatcatgtattcccgggaatgtcattctt 39502940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 37995618 - 37995799
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||||| |||||||||||||||| |||||||||||||    
T  37995618 aatatcatgggaatgcacattctcatctctttacatgggaataaattcataggaataatggaagttatgggaagttactccattccaaggaacctttata 37995717  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | || |||||       |||||||||||||||||||||||||||||||||| ||| ||||||||||  || ||| ||||||||    
T  37995718 cccatgaata-ttttttctcaacctcataacaaacatgggtataatcattccgtaaccatgtattcatgggaatatcattctt 37995799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 56080766 - 56080948
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| || ||||| ||||  ||||||||| ||| |||||||||||||||||  |||||||||||||||||||||||||||||    
T  56080766 aatatcatgggaatgcacattcccacctcttaacatgagaataaattcatgggaataatggaagttatggaaagttactccattcccaggaacctttata 56080865  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       ||||||||||||||||||||| ||||||||||||  ||| |||| | |||||| ||||||||||||    
T  56080866 cccaggaatatttttttctcaacctcataacaaacatgagtataatcattccctagtcatgcagtcccgggaatgtcattctt 56080948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 26695994 - 26696177
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||| ||| ||| |||||||||||    
T  26695994 aatatcatgggaatgtacattcccatctctttacatgggaataagtttatgggaataatggaagttatgggaagttactctatttccatgaacctttata 26696093  T
Q  115 ctcaggaata-nnnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||| ||||        ||||||||||||||||||||||||||||||||||  ||| ||||||||||||| ||| ||||||||    
T  26696094 cccagaaatattttttttctcaacctcataacaaacatgggtataatcattccctagtcatgtattcccgggaatatcattctt 26696177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 40591100 - 40590918
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| || ||||| ||||  ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40591100 aatatcatgggaatgcacattcccacctcttaacatgagaataaattcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 40591001  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
      ||||||||       ||||||||||||||||||||| ||||||||||||  ||  |||| | |||||| ||||||||||||    
T  40591000 tccaggaatatttttttctcaacctcataacaaacatgagtataatcattccctaatcatgcagtcccgggaatgtcattctt 40590918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 24072596 - 24072726
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||     
T  24072596 gaataatggaagttatgggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattcc 24072695  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     ||||||||||||||||| ||| ||||||||    
T  24072696 ctagccatgtattcccgggaatatcattctt 24072726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 2623289 - 2623152
Alignment:
Q  53 gaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatg 152  Q
    ||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||| ||||||  |||||||       |||||||||||||||||||||    
T  2623289 gaataaatttatgggaataatggaagttatgggaagttactctattcccaagaacccttatacctaggaatatttttttctcaacctcataacaaacatg 2623190  T
Q  153 ggtataatcattctgtagccatgtattcccggaaatgt 190  Q
    |||||||||||||  ||||||||||||||||| |||||    
T  2623189 ggtataatcattccctagccatgtattcccgggaatgt 2623152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 45620367 - 45620195
Alignment:
Q  13 agaatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaaccttta 112  Q
    |||||||||||| ||||||||||||||||||||||  | |||||||||| ||| ||||||||||||||||| ||||||||| |||| || |||||||| |    
T  45620367 agaatatcatggaaatgcacattctcatctctttat-tgggaataaattcatgggaataatggaagttatgggaagttacttcatttccgggaaccttaa 45620269  T
Q  113 tactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaa 186  Q
    | ||||||||||       |||||||| |||||||||||||||||||| ||||  |||||||| ||||| ||||    
T  45620268 tgctcaggaatatttttttctcaaccttataacaaacatgggtataatgattccctagccatgcattccgggaa 45620195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 127943 - 127813
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||| ||||||||| ||||||||| |||||||| |||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||     
T  127943 gaataatagaagttatgggaagttacttcattcccatgaacctttatactcaggaatatttttttctcaacctcataacaaacatgagtataatcattcc 127844  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     |||| |||||||||||| ||||||||||||    
T  127843 ctagctatgtattcccgggaatgtcattctt 127813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 51790153 - 51789986
Alignment:
Q  13 agaatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaaccttta 112  Q
    |||||||| |||||||||||||| ||| ||||||||||  ||||||||| ||| ||||||||||||||||| ||||||||| ||||| ||  ||||||||    
T  51790153 agaatatcgtgggaatgcacattttcacctctttacatgagaataaattcatgggaataatggaagttatgagaagttacttcattctcacaaaccttta 51790054  T
Q  113 tactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattc 180  Q
    ||   |||||||       || |||||||||||||||||| ||||||||||||  || ||||||||||    
T  51790053 tatctaggaatatttttttctaaacctcataacaaacatgagtataatcattccctaaccatgtattc 51789986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 31335093 - 31334993
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||  |||||||||| ||  ||||||||| ||| ||||||||||||| |||  |||||||| |||||| |||||||||||||    
T  31335093 aatatcatgggaatgcacatttccatctctttatatgagaataaattcatgggaataatggaagtcatggaaagttacttcattcctaggaacctttata 31334994  T
Q  115 c 115  Q
    |    
T  31334993 c 31334993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 22602386 - 22602451
Alignment:
Q  132 ctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |||||||| ||||||||||| |||||| ||||||  |||||||||||||| || ||||||||||||    
T  22602386 ctcaaccttataacaaacattggtatagtcattccctagccatgtattcctgggaatgtcattctt 22602451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 39499420 - 39499462
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaata 57  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  39499420 aatatcatgggaatgcacattcccatctctttacatgggaata 39499462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 54230924 - 54230984
Alignment:
Q  54 aataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    ||||||||||||  ||||||| |||||||| ||||||||| ||||| || |||||||||||    
T  54230924 aataaatttatgaaaataatgaaagttatgggaagttacttcattctcaagaacctttata 54230984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 24072558 - 24072593
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacat 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  24072558 aatatcatgggaatgcacattcccatctctttacat 24072593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 6e-55; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 21620209 - 21620391
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||    
T  21620209 aatatcatgggaatgtacattcccatctctttacatgggaataagtttatgggaataatggaagttatgggaagttactctattcctaggaacctttata 21620308  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    ||||||||||       |||||||||||||||||||||||||||||||||   || |||||||||||||| ||||||||||||    
T  21620309 ctcaggaatatttttttctcaacctcataacaaacatgggtataatcatttcctaaccatgtattcccgggaatgtcattctt 21620391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 19565334 - 19565515
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||     
T  19565334 aatatcatgggaatgcacattcccatctctttacatgggaataaatttatgggaataatggaagttatgggaagttactctattcccacgaacctttatg 19565433  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       |||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||    
T  19565434 cccaggaata-ttttttctcaacctcataacaaacatgggtataatcatttcctagccatgtattcccgggaatgtcattctt 19565515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 40125581 - 40125763
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    ||||||||||||||||||||||  || ||||||||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  40125581 aatatcatgggaatgcacattcctatatctttacatgggaataaattcatgggaataatggaagttatgggaagttactcgattctcaggaacctttata 40125680  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |  |||||||       ||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||    
T  40125681 ccaaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccagaaatgtcattctt 40125763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 45360340 - 45360522
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  45360340 aatatcatgggaatgcacattcccatctctttacatgggaatatattcatggaaataatggaagttatgggaagttactccattcccaggaacctttata 45360439  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    |  |||||||       |||||||||||||||||||||| |||||||||||  || |||||||||||||| ||||||||||||    
T  45360440 cctaggaatatttttttctcaacctcataacaaacatggatataatcattccctaaccatgtattcccgggaatgtcattctt 45360522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 5555362 - 5555544
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||||||  || ||||||||| |||||||||||||||||    
T  5555362 aatatcatgggaatgcacattctcatctctttacatgcgaataaattcatgggaataatggaagttataggaggttactccactcccaggaacctttata 5555461  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    | ||||||||       | |||||| |||| ||||||||||||||||||||  || ||||||||||| || ||||||||||||    
T  5555462 cccaggaatatttttttcgcaacctgataataaacatgggtataatcattccctaaccatgtattcctgggaatgtcattctt 5555544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 25473837 - 25473684
Alignment:
Q  44 tttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcata 143  Q
    ||||||| |||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||       ||||||||||||    
T  25473837 tttacatgggaatatattcatgggaataatggaagttatgggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcata 25473738  T
Q  144 acaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    ||||||||||||||||||||||  |||| |||||||||||| ||||||||||||    
T  25473737 acaaacatgggtataatcattccctagctatgtattcccgggaatgtcattctt 25473684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 14236598 - 14236728
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||  |||||||       ||||||||||||||||||||||||||||||||||     
T  14236598 gaataatggaagttatgggaagttactctattcccaggaacctttatacctaggaatatttttttctcaacctcataacaaacatgggtataatcattcc 14236697  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     ||||||||||||||||| ||||||||||||    
T  14236698 ctagccatgtattcccgggaatgtcattctt 14236728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 3656722 - 3656852
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||       |||||||||||||||||||| |||||||||||||     
T  3656722 gaataatggaagttatgagaagttactccattcccatgaacctttatacccaggaatatttttttctcaacctcataacaaacattggtataatcattcc 3656821  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     |||| |||||||||||| ||||||||||||    
T  3656822 ctagctatgtattcccgggaatgtcattctt 3656852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 43069014 - 43068885
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||     
T  43069014 gaatgatggaagttatgggaagttactccattcccaggaacctttatac-caggaatatttttttctcaacctcataacaaacatgggtataatcattcc 43068916  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     |||||||||||| |||  ||||||||||||    
T  43068915 ctagccatgtatttccgataatgtcattctt 43068885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 32550357 - 32550239
Alignment:
Q  79 ttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtat 178  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||       ||||||||||||| ||||||||||||||||||||  |||||||||||    
T  32550357 ttatgggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataataaacatgggtataatcattccctagccatgtat 32550258  T
Q  179 tcccggaaatgtcattctt 197  Q
    | || | ||||||||||||    
T  32550257 ttccaggaatgtcattctt 32550239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 4643792 - 4643921
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| ||| ||||| |||| ||||||| ||||||||||| |||||       ||||||||| ||||||| |||||||||||||||||    
T  4643792 gaataatggaagttatgagaaattacttcattaccaggaatctttatactcaagaatatttttt-ctcaacctcgtaacaaatatgggtataatcattct 4643890  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     |||||||||||||||| |||||||||||||    
T  4643891 ttagccatgtattcccgaaaatgtcattctt 4643921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 25304345 - 25304163
Alignment:
Q  15 aatatcatgggaatgcacattctcatctct-ttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttat 113  Q
    |||||||||||||||||||||  |  || | ||||||  ||||||||| ||| ||||||  ||||||||| ||||||||| ||||| || | |||||| |    
T  25304345 aatatcatgggaatgcacatttcccactttcttacatgagaataaattcatgggaataagagaagttatgagaagttacttcattcacaagtaccttttt 25304246  T
Q  114 actcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaaatgtcattctt 197  Q
    ||| |||||||       |||||||||||||||||||| ||||||| |||||  ||||||||||| | | ||||||||||||||    
T  25304245 acttaggaatatttttttctcaacctcataacaaacat-ggtataaccattccttagccatgtatactcagaaatgtcattctt 25304163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 16296751 - 16296612
Alignment:
Q  54 aataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgg 153  Q
    |||||||| ||| |||||| |||||||||   |||||| |  ||||| | ||||||||||||| |||||||       | ||||||||||||||| ||||    
T  16296751 aataaattcatgggaataagggaagttataaaaagttaattaattccgaagaacctttatacttaggaatatttttttcccaacctcataacaaatatgg 16296652  T
Q  154 gtataatcattctgtagccatgtattcccggaaatgtcat 193  Q
     |||||||| ||  ||||||||||||||||  ||||||||    
T  16296651 atataatcaatccctagccatgtattcccgagaatgtcat 16296612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 6694021 - 6693892
Alignment:
Q  68 aataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctg 167  Q
    ||||||| ||| |||| ||||||||| ||||| || |||  |||||||  |||||||       | ||||||||||||||||||| ||||||||||||      
T  6694021 aataatgaaaggtatgagaagttacttcattcacatgaatttttatacctaggaatatttttttcacaacctcataacaaacatgagtataatcattccc 6693922  T
Q  168 tagccatgtattcccggaaatgtcattctt 197  Q
    ||| |||||||||  || ||||||||||||    
T  6693921 tagtcatgtattcgtgggaatgtcattctt 6693892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 35371618 - 35371574
Alignment:
Q  135 aacctcataacaaacatgggtataatcattctgtagccatgtatt 179  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||    
T  35371618 aaccttataacaaacatgggtataatcattctctagccatgtatt 35371574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 4643752 - 4643789
Alignment:
Q  13 agaatatcatgggaatgcacattctcatctctttacat 50  Q
    |||||||||||||||||||||||| |||||||||||||    
T  4643752 agaatatcatgggaatgcacattcccatctctttacat 4643789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 14236560 - 14236595
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacat 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  14236560 aatatcatgggaatgcacattcccatctctttacat 14236595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 43069052 - 43069017
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacat 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  43069052 aatatcatgggaatgcacattcccatctctttacat 43069017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 24765370 - 24765539
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| || ||| ||||||||||||||||| ||||||||| ||||| |||||| |||||||    
T  24765370 aatatcatgggaatgcacattcccatctctttacatgggaataagttcatgggaataatggaagttatgggaagttacttcattctcaggaatctttata 24765469  T
Q  115 ctcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattctgtagccatgtattcccggaa 186  Q
    | ||||||||       |||| ||||||||||||||||||  |||||||||  || ||||||||||| ||||    
T  24765470 cccaggaataattttttctcagcctcataacaaacatggg--taatcattccctaaccatgtattccgggaa 24765539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 4653742 - 4653841
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacataggaataaatttatgtgaataatggaagttatgtgaagttactccattcccaggaacctttata 114  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4653742 aatatcatgggaatgcacattcccatctctttacatgggaataagttcatgggaataatggaagttatgggaagttactccattcccaggaacctttata 4653841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 33756598 - 33756709
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaata--nnnnnnnctcaacctcataacaaacatgggtat-aatcat 163  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||| ||| || |||||         ||||||||||||||||||||| |||| ||||||    
T  33756598 gaataatggaagttatgggaagttacttcattccca-gaacctttgtacccatgaatatttttttttctcaacctcataacaaacatgagtataaatcat 33756696  T
Q  164 tctgtagccatgt 176  Q
    ||  |||||||||    
T  33756697 tccctagccatgt 33756709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 78; Significance: 7e-36; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 59224 - 59354
Alignment:
Q  67 gaataatggaagttatgtgaagttactccattcccaggaacctttatactcaggaatannnnnnnctcaacctcataacaaacatgggtataatcattct 166  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||       ||||||||||||||||||||||||||||| ||||     
T  59224 gaataatggaagttatgggaagttactccattcccatgaacctttaaacccaggaatatttttttctcaacctcataacaaacatgggtataataattcc 59323  T
Q  167 gtagccatgtattcccggaaatgtcattctt 197  Q
     ||||||||||||||||| ||||||||||||    
T  59324 ctagccatgtattcccgggaatgtcattctt 59354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 59186 - 59221
Alignment:
Q  15 aatatcatgggaatgcacattctcatctctttacat 50  Q
    ||||||||||||||| ||||||||||||||||||||    
T  59186 aatatcatgggaatgaacattctcatctctttacat 59221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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