View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7823_low_10 (Length: 334)
Name: NF7823_low_10
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 15999560 - 15999254
Alignment:
| Q |
18 |
ataagaggttgcaattgtttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaagaatgacaaagtttgttacagctttcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
15999560 |
ataagaggttgcaattgtttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaaggatgacaaactttgttatagctttcc |
15999461 |
T |
|
| Q |
118 |
tacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccacttacaaggtttgattgcctagggtcttttaacatgttagaggg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15999460 |
tacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccacttacaaggtttgattgcctagggtattttaacatgttagaggg |
15999361 |
T |
|
| Q |
218 |
tttttgaagacaaattttagtgtgtgctaacatgctggatgtcccatgtgctttagaatgacagtgatatcgtttatggcaatgtttacaagctgccaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15999360 |
tttttgaagacaaattttagtgtgtgctaacatgctggatgtcccatgtgctttagaatgacagtgatatcgtttatggcaatgtttacaagctgctaca |
15999261 |
T |
|
| Q |
318 |
ggttctg |
324 |
Q |
| |
|
||||||| |
|
|
| T |
15999260 |
ggttctg |
15999254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 6839241 - 6839547
Alignment:
| Q |
18 |
ataagaggttgcaattgtttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaagaatgacaaagtttgttacagctttcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
6839241 |
ataagaggttgcaattgtttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaaggatgacaaagtttgttaaagctttcc |
6839340 |
T |
|
| Q |
118 |
tacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccacttacaaggtttgattgcctagggtcttttaacatgttagaggg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6839341 |
tacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccacttacaaggtttgattgcctagtgtcttttaacatgttagaggg |
6839440 |
T |
|
| Q |
218 |
tttttgaagacaaattttagtgtgtgctaacatgctggatgtcccatgtgctttagaatgacagtgatatcgtttatggcaatgtttacaagctgccaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | | |
|
|
| T |
6839441 |
tttttgaagacaaattttagtgtgtgctaacatgctagatgtcccatgtgctttagaatgacagcgatatcgtttatggcaatgtttacaaactgctata |
6839540 |
T |
|
| Q |
318 |
ggttctg |
324 |
Q |
| |
|
||||||| |
|
|
| T |
6839541 |
ggttctg |
6839547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 36 - 313
Target Start/End: Complemental strand, 7285251 - 7284971
Alignment:
| Q |
36 |
ttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaagaatgacaaagtttgttacagctttcctacactctattgcattgt |
135 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||| || |||| |||||| |||| ||| |||| |||||||||||| |||||||||||||| || ||| || |
|
|
| T |
7285251 |
ttactaagtttcttaaattcctcaccttctaccactctaagggcatgctcataaaggatgaaaaagtttgttacgactttcctacactcttttacatcgt |
7285152 |
T |
|
| Q |
136 |
acctttggtttgcagcaactagcaaaccaccctttccacttac---aaggtttgattgcctagggtcttttaacatgttagagggtttttgaagacaaat |
232 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| || ||| ||||||| ||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
7285151 |
acctttggtttgcaggaactagaaaaccaccctttctacctactacaaggtttaattgcctagggtcttttaatatgttagaaggtttttgaagacaaac |
7285052 |
T |
|
| Q |
233 |
tttagtgtgtgctaacatgctggatgtcccatgtgctttagaatgacagtgatatcgtttatggcaatgtttacaagctgc |
313 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
7285051 |
tttagagtgtgctaacatgctggatgtcccatgtgctttagaatcacaacgatatcgtctatgacaatgtttacaagctgc |
7284971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 307
Target Start/End: Complemental strand, 13935728 - 13935498
Alignment:
| Q |
77 |
ggcatgttcatcaagaatgacaaagtttgttacagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccactt |
176 |
Q |
| |
|
||||||||| ||||| || |||||||| ||||| | | ||| | ||| ||||||||||||||||| | || | |||||| ||||||||||| ||| || |
|
|
| T |
13935728 |
ggcatgttcgtcaaggataacaaagttggttacgacatcactataatcttttgcattgtacctttggctagctgaaactagaaaaccacccttcccattt |
13935629 |
T |
|
| Q |
177 |
acaaggtttgattgcctagggtcttttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatgctggatgtcccatgtgctttagaat |
276 |
Q |
| |
|
| ||| |||| |||||||||||| |||| |||||| ||||| | ||| || | | ||| ||||||||||||| |||| || |||| | |||||||| |
|
|
| T |
13935628 |
ataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcagactctagagtgtgctaacatgttggacgttccatttaatttagaat |
13935529 |
T |
|
| Q |
277 |
gacagtgatatcgtttatggcaatgtttaca |
307 |
Q |
| |
|
||| || |||| ||||||||| |||||||| |
|
|
| T |
13935528 |
cacaatggtatcttttatggcagtgtttaca |
13935498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 310
Target Start/End: Complemental strand, 13307147 - 13306861
Alignment:
| Q |
24 |
ggttgcaattgtttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaagaatgacaaagtttgttacagctttcctacact |
123 |
Q |
| |
|
||||| |||| |||||| | |||||| || |||||||||||||| || ||||| |||||||| ||||| || |||||||| |||||||| | |||||| | |
|
|
| T |
13307147 |
ggttgtaattttttacataattgcttgaacccctcaccttctaccactctaaaagcatgttcgtcaaggataacaaagttggttacagcatccctacaat |
13307048 |
T |
|
| Q |
124 |
ctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccacttacaaggtttgattgcctagggtcttttaacatgttagagggtttttg |
223 |
Q |
| |
|
|| ||||||||||||||||| | || | |||||| ||||||||||| ||| ||| ||| ||| |||||||||||| |||| |||||| ||||| | |
|
|
| T |
13307047 |
cttttgcattgtacctttggctagctgaaactagaaaaccacccttcccatttataagatttttttgcctagggtcatttagcatgttctctggtttctt |
13306948 |
T |
|
| Q |
224 |
aagacaaattttagtgtgtgctaacatgctggatgtcccatgtgctttagaatgacagtgatatcgtttatggcaatgtttacaagc |
310 |
Q |
| |
|
||| || | | || ||||||||||||| |||| ||||||| | |||||||| ||| | |||| ||||||||| ||||||||||| |
|
|
| T |
13306947 |
aaggcagactctacagtgtgctaacatgttggacgtcccatttaatttagaatcacaacggtatcttttatggcagtgtttacaagc |
13306861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 14596729 - 14596901
Alignment:
| Q |
24 |
ggttgcaattgtttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaagaatgacaaagtttgttacagctttcctacact |
123 |
Q |
| |
|
||||| |||| |||||| | |||||| || ||||||||||||||||| ||||| |||||||| ||||| || |||||||| ||||| || | |||||| | |
|
|
| T |
14596729 |
ggttgtaattttttacataattgcttgaacccctcaccttctacaactctaaaagcatgttcgtcaaggataacaaagttggttacggcatccctacagt |
14596828 |
T |
|
| Q |
124 |
ctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccacttacaaggtttgattgcctagg |
196 |
Q |
| |
|
|| ||||||||||||||||| | || | |||||| ||||||||||| ||| ||| ||| |||| ||||||||| |
|
|
| T |
14596829 |
cttttgcattgtacctttggctagctgaaactagaaaaccacccttcccatttataagatttgtttgcctagg |
14596901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 310
Target Start/End: Original strand, 49282118 - 49282350
Alignment:
| Q |
77 |
ggcatgttcatcaagaatgacaaagtttgttacagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccactt |
176 |
Q |
| |
|
||||||||| ||||| | |||||||| ||||| || | |||||| ||| |||||| |||||||||| | | |||||| ||||||||||| ||| || |
|
|
| T |
49282118 |
ggcatgttcgtcaaggttaacaaagttggttacggcatccctacaatcttttgcat-gtacctttggctacttgaaactagaaaaccacccttcccattt |
49282216 |
T |
|
| Q |
177 |
acaaggtttgattgcctagggtcttttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatgctggatgtcccatgtgctttagaat |
276 |
Q |
| |
|
| ||| |||| |||||||||||| |||| |||||| ||||| | ||| || | | ||| ||||||||||||| |||| ||||||| | |||||||| |
|
|
| T |
49282217 |
ataagatttgtttgcctagggtcatttagcatgttctctggtttcttaaggcagactctagagtgtgctaacatgttggacgtcccatttaatttagaat |
49282316 |
T |
|
| Q |
277 |
gacagtgatatcgtttatggcaatgtttacaagc |
310 |
Q |
| |
|
||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
49282317 |
cacaatgatatcttttatggcagtgtttacaagc |
49282350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 310
Target Start/End: Complemental strand, 13786857 - 13786663
Alignment:
| Q |
116 |
cctacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccacttacaaggtttgattgcctagggtcttttaacatgttagag |
215 |
Q |
| |
|
|||||| ||| ||||||||||||||||| | | | |||||| ||| ||||||| ||| ||| ||| |||| |||||||||||| |||| |||||| |
|
|
| T |
13786857 |
cctacaatcttttgcattgtacctttggctaactgaaactagaaaatcacccttcccatttataagatttgtttgcctagggtcatttagcatgttctct |
13786758 |
T |
|
| Q |
216 |
ggtttttgaagacaaattttagtgtgtgctaacatgctggatgtcccatgtgctttagaatgacagtgatatcgtttatggcaatgtttacaagc |
310 |
Q |
| |
|
||||| | ||| | | | || |||||||||||||||||| |||||| | |||||||| ||| |||||| ||||||||| ||||||||||| |
|
|
| T |
13786757 |
ggtttcttaaggtagactctacagtgtgctaacatgctggacttcccatttaatttagaatcacaacgatatcttttatggcagtgtttacaagc |
13786663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 13786480 - 13786409
Alignment:
| Q |
239 |
gtgtgctaacatgctggatgtcccatgtgctttagaatgacagtgatatcgtttatggcaatgtttacaagc |
310 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||| ||| |||||| ||||||||| ||||||||||| |
|
|
| T |
13786480 |
gtgtgctaacatgctggacttcccatttaatttagaatcacaacgatatcttttatggcagtgtttacaagc |
13786409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University