View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7823_low_15 (Length: 309)
Name: NF7823_low_15
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 9378876 - 9378580
Alignment:
| Q |
18 |
actactatattggctatattccatgttttctaattcaaacatcatgtgaaggagaggaatgttttttgaggtagagagtgtgtttgtgtttgtgt----- |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9378876 |
actactatattggctatattccatgttttctaattcaaacatcatgtgaaggagaggaatgttttttgaggtagagagtgtgtttgtgtttgtgtttgtg |
9378777 |
T |
|
| Q |
113 |
-------------ctttgccttgtgatgatatgcatgtatctatatatattggctttaagttatttgagttcttatcatgaggggaagattaaactcatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9378776 |
tttgtgtttgtgtctttgccttgtgatgatatgcatgtatctatatatattggctttaagttatttgagttcttatcatgaggggaagattaaactcatc |
9378677 |
T |
|
| Q |
200 |
aattgctagctttatatccaaaacttattggtcctgctacacaattttcttccacctgtgcattgtgaatattacctatttttcctttttctcatct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9378676 |
aattgctagctttatatccaaaacttattggtcctgctacacaattttcttccacctgtgcattgtgaatattacctatttttcctttttcccatct |
9378580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 8185779 - 8185709
Alignment:
| Q |
165 |
tgagttcttatcatgaggggaagattaaactca-tcaattgctagctttatatccaaaacttattggtcct |
234 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8185779 |
tgagttcttatcatgaggatcagatttaaccccctcaattgctagctttatatccaaaactcattggtcct |
8185709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University