View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7823_low_2 (Length: 782)
Name: NF7823_low_2
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_low_2 |
 | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
| [»] scaffold2086 (2 HSPs) |
| | |
|
| [»] scaffold1996 (3 HSPs) |
| | |
|
| [»] scaffold1335 (2 HSPs) |
| | |
|
| [»] scaffold0654 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0891 (Bit Score: 739; Significance: 0; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 1 - 763
Target Start/End: Complemental strand, 4179 - 3418
Alignment:
| Q |
1 |
agaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatcccctcaaatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4179 |
agaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatccc-tcaaatta |
4081 |
T |
|
| Q |
101 |
gttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttctcttagctctttcctctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4080 |
gttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttctcttagctctttcctctg |
3981 |
T |
|
| Q |
201 |
ataatctagagtttggttgtgagataagtatagttttaccaacaattgttccatccaagaattgaattctgattctcccaaacgatttgtcatttggtga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3980 |
ataatctagagtttggttgtgagataagtatagttttaccaacaattgttccatccaagaattgaattctggttctcccaaacgatttgtcatttggtga |
3881 |
T |
|
| Q |
301 |
agcttattaactatttgagttcaactgtttggttaaagtagacaggtaatagaatataagtattacaactaaaccaaaatataattcatattagactaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3880 |
agcttattaactatttgagttcaactgtttggtcaaagtagataggtaatagaatataagtattacaactaaaccaaaatataattcatattagactaat |
3781 |
T |
|
| Q |
401 |
atttggaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3780 |
atttggaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttc |
3681 |
T |
|
| Q |
501 |
ttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3680 |
ttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttccattacaatttcagttatatcatcccttttaacatcatggt |
3581 |
T |
|
| Q |
601 |
taatttccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3580 |
taatttccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaat |
3481 |
T |
|
| Q |
701 |
agtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaag |
763 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3480 |
agtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaag |
3418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 400 - 759
Target Start/End: Original strand, 35774310 - 35774669
Alignment:
| Q |
400 |
tatttggaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagcttt |
499 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||| | || ||||| || |||||||||||||| |||| ||||||| ||||| | | |||||| |
|
|
| T |
35774310 |
tatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgatgatccacccaaattagtagcttttctagcttt |
35774409 |
T |
|
| Q |
500 |
cttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatgg |
599 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| | |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
35774410 |
cttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccatcatttgcacaacaagttctgttatatcatcccttttaacatcatgg |
35774509 |
T |
|
| Q |
600 |
ttaatttccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaa |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35774510 |
ttaatttccatccctattttccaagacttgcataaataccaacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcacaccataggaaa |
35774609 |
T |
|
| Q |
700 |
tagtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgag |
759 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
35774610 |
tagtttcaagtgtagaattccaaccacaatgagttaagaatcccccaattgatggatgag |
35774669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 406 - 759
Target Start/End: Original strand, 35848097 - 35848450
Alignment:
| Q |
406 |
gaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttctt |
505 |
Q |
| |
|
|||||||||| || || ||||||||||| ||| | || |||||||| |||||||||||||| |||||||||||| ||||| | || |||||||||||| |
|
|
| T |
35848097 |
gaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttctt |
35848196 |
T |
|
| Q |
506 |
ccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaatt |
605 |
Q |
| |
|
||| |||| | ||| ||||||||||||||||| ||||||| || ||||||||| || |||| |||| |||| || || ||||| ||||||| ||||||| |
|
|
| T |
35848197 |
ccacaccaaactcttttgtctcatttcttttcctttttctccttccatcatttccatcacaagttcaattatctcttcacttttcacatcatagttaatt |
35848296 |
T |
|
| Q |
606 |
tccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagttt |
705 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35848297 |
tccatcccaattttccaagtgttgcataaatacctacaatttgtttgttgctcaacaaagaaaggccaacaaatagtaggcacaccataggaaatagttt |
35848396 |
T |
|
| Q |
706 |
caagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgag |
759 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35848397 |
caagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgag |
35848450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 407 - 759
Target Start/End: Original strand, 35865769 - 35866121
Alignment:
| Q |
407 |
aactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttc |
506 |
Q |
| |
|
||||||||||||||| |||||||||| ||| |||| || |||| |||||| ||||||| |||||||||||| ||||| | || ||||||||||||| |
|
|
| T |
35865769 |
aactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattaatgtatgatgatcctcccaaattagtagcatctgtagctttcttcttc |
35865868 |
T |
|
| Q |
507 |
cattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaattt |
606 |
Q |
| |
|
|| |||| | ||| ||||||||||||||||| ||||||| || ||||||||| || |||| ||| |||| || || ||||| ||||||| |||||||| |
|
|
| T |
35865869 |
cacaccaaactcttttgtctcatttcttttcctttttctccttccatcatttccatcacaagttctcttatctcttctcttttcacatcatagttaattt |
35865968 |
T |
|
| Q |
607 |
ccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttc |
706 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35865969 |
ccatccctattttccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcacaccataggaaatagtttc |
35866068 |
T |
|
| Q |
707 |
aagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgag |
759 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35866069 |
aagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgag |
35866121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 408 - 763
Target Start/End: Original strand, 35754195 - 35754550
Alignment:
| Q |
408 |
actcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttcc |
507 |
Q |
| |
|
||||||| |||||| ||| ||||||| ||| |||| |||||||| |||||| ||||||| ||||||| |||||| ||| | | |||||||||||||| |
|
|
| T |
35754195 |
actcaaaaagcattgtgacgaagaacctctgtaattaacttatggaaattagtgtatgatgatcctccaaaatcattagcctttttagctttcttcttcc |
35754294 |
T |
|
| Q |
508 |
attccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaatttc |
607 |
Q |
| |
|
| || | || ||| ||| |||||| |||||||||||||| |||||||||||| | ||||| ||| ||||| || |||||||| ||||||| ||||||||| |
|
|
| T |
35754295 |
actctatgctcttttgtttcatttgttttcccttttctcctttcatcatttccagtacaagttctgttatctcttccctttttacatcattgttaatttc |
35754394 |
T |
|
| Q |
608 |
catccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttca |
707 |
Q |
| |
|
||| |||| |||||||| | |||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
35754395 |
cattcctactttccaagtgtcgcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttca |
35754494 |
T |
|
| Q |
708 |
agtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaag |
763 |
Q |
| |
|
| |||||||||||||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
35754495 |
attgtagaattccaaccacaatgagttagaaaaaccccaactgatggatgagcaag |
35754550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 35774298 - 35774482
Alignment:
| Q |
6 |
atactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatcccctcaaattag---- |
101 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||||| || || |||||||||||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
35774298 |
atactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgatgatccacccaaattagtagc |
35774397 |
T |
|
| Q |
102 |
--ttctagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||| || ||||||||| |
|
|
| T |
35774398 |
ttttctagctttcttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccatcatttgcacaacaagttct |
35774482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 564 - 764
Target Start/End: Original strand, 35735512 - 35735712
Alignment:
| Q |
564 |
acaatttcagttatatcatcccttttaacatcatggttaatttccatccctattttccaagacttgcataaatacctacaatttgtttgttgttcagcaa |
663 |
Q |
| |
|
|||| |||||||| || || ||||| ||||||| ||||| ||||||||||| ||||| ||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
35735512 |
acaagttcagttacctcttctcttttcacatcatccttaatatccatccctatcccccaagttgtgcttatatacctacaatttgtttgttgctcagcaa |
35735611 |
T |
|
| Q |
664 |
agaaaggccaacaaatagtaggcacaccataagaaatagtttcaagtgtagaattccaaccacaatgagtcaagaatcccccaactgatggatgagcaag |
763 |
Q |
| |
|
|||||||||||| ||| ||||| ||| | ||||||| | ||||||| |||||||||||||||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
35735612 |
agaaaggccaaccaatcataggcttaccttcagaaatactctcaagtgatgaattccaaccacaatgagttaaaaataccccaactgatggatgagcaag |
35735711 |
T |
|
| Q |
764 |
t |
764 |
Q |
| |
|
| |
|
|
| T |
35735712 |
t |
35735712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 35848122 - 35848262
Alignment:
| Q |
49 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat |
141 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| | |
|
|
| T |
35848122 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
35848221 |
T |
|
| Q |
142 |
tcttcttccttttctccttccatcatttccatcacaagttc |
182 |
Q |
| |
|
|||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
35848222 |
tcttttcctttttctccttccatcatttccatcacaagttc |
35848262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 70 - 193
Target Start/End: Original strand, 35865814 - 35865944
Alignment:
| Q |
70 |
gaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttcc |
162 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| ||||| | | |||||||||||| |
|
|
| T |
35865814 |
gaaattaatgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatttcttttcctttttctccttcc |
35865913 |
T |
|
| Q |
163 |
atcatttccatcacaagttctcttagctctt |
193 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
35865914 |
atcatttccatcacaagttctcttatctctt |
35865944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 40950878 - 40950954
Alignment:
| Q |
222 |
agataagtatagttttaccaacaattgttccatccaagaattgaattctga-ttctcccaaacgatttgtcatttggt |
298 |
Q |
| |
|
|||||| |||||| | ||||||||||||| ||||||| ||||||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
40950878 |
agataaatatagtctgaccaacaattgtttcatccaaaaattgaatt-tgagttctttcaaacgatttgtcatttggt |
40950954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 35220689 - 35220729
Alignment:
| Q |
271 |
gattctcccaaacgatttgtcatttggtgaagcttattaac |
311 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35220689 |
gattatcccaaacgattcgtcatttggtgaagcttattaac |
35220729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 35754280 - 35754369
Alignment:
| Q |
105 |
tagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttccatcatttccatcacaagttctcttagctctt |
193 |
Q |
| |
|
||||||||||||||||||| | || |||| || ||| || || | |||||||||||| ||||||||||| ||||||||| ||| ||||| |
|
|
| T |
35754280 |
tagctttcttcttccactctatgctcttttgtttcatttgttttcccttttctcctttcatcatttccagtacaagttctgttatctctt |
35754369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 419 - 763
Target Start/End: Complemental strand, 625 - 281
Alignment:
| Q |
419 |
attttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttccattccaagcac |
518 |
Q |
| |
|
||||| ||||||||| ||| | | |||||||||||||||||||| || |||||||||||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
625 |
attttcatgaagaacctctttgactaacttatgaaaattattgtaggacaatcctcccaaatcagtagcttctgtagctttcttcttccattccaagcac |
526 |
T |
|
| Q |
519 |
ttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaatttccatccctattt |
618 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
525 |
ttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttcttttatatcatcccttttaacatcatggttaatttccatccctattt |
426 |
T |
|
| Q |
619 |
tccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttcaagtgtagaatt |
718 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||||||| |
|
|
| T |
425 |
tccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcataccagaagatatagcttcaagtgtagaatt |
326 |
T |
|
| Q |
719 |
ccaaccacaatgagtcaagaatcccccaactgatggatgagcaag |
763 |
Q |
| |
|
||||||||||||||| | ||| || ||||| |||||||||||||| |
|
|
| T |
325 |
ccaaccacaatgagttaggaaccctccaaccgatggatgagcaag |
281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 551 - 472
Alignment:
| Q |
105 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
183 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttct |
472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 419 - 763
Target Start/End: Complemental strand, 625 - 281
Alignment:
| Q |
419 |
attttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttccattccaagcac |
518 |
Q |
| |
|
||||| ||||||||| ||| | | |||||||||||||||||||| || |||||||||||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
625 |
attttcatgaagaacctctttgactaacttatgaaaattattgtaggacaatcctcccaaatcagtagcttctgtagctttcttcttccattccaagcac |
526 |
T |
|
| Q |
519 |
ttgtgtctcatttcttttcccttttctcgtttcatcatttcgattacaatttcagttatatcatcccttttaacatcatggttaatttccatccctattt |
618 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
525 |
ttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttcttttatatcatcccttttaacatcatggttaatttccatccctattt |
426 |
T |
|
| Q |
619 |
tccaagacttgcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttcaagtgtagaatt |
718 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||||||| |
|
|
| T |
425 |
tccaagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcataccagaagatatagcttcaagtgtagaatt |
326 |
T |
|
| Q |
719 |
ccaaccacaatgagtcaagaatcccccaactgatggatgagcaag |
763 |
Q |
| |
|
||||||||||||||| | ||| || ||||| |||||||||||||| |
|
|
| T |
325 |
ccaaccacaatgagttaggaaccctccaaccgatggatgagcaag |
281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 564 - 654
Target Start/End: Complemental strand, 1173 - 1083
Alignment:
| Q |
564 |
acaatttcagttatatcatcccttttaacatcatggttaatttccatccctattttccaagacttgcataaatacctacaatttgtttgtt |
654 |
Q |
| |
|
|||| ||| ||||| || |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1173 |
acaagttcggttatctcttcccttttcacatcatggttaatttccatcccaattttccaagtgttgcataaatacctacaatttgtttgtt |
1083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 551 - 472
Alignment:
| Q |
105 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
183 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttct |
472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 141 - 1
Alignment:
| Q |
49 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat |
141 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| | |
|
|
| T |
141 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
42 |
T |
|
| Q |
142 |
tcttcttccttttctccttccatcatttccatcacaagttc |
182 |
Q |
| |
|
|||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
41 |
tcttttcctttttctccttccatcatttccatcacaagttc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 406 - 559
Target Start/End: Complemental strand, 166 - 13
Alignment:
| Q |
406 |
gaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttctt |
505 |
Q |
| |
|
|||||||||| || || ||||||||||| ||| | || |||||||| |||||||||||||| |||||||||||| ||||| | || |||||||||||| |
|
|
| T |
166 |
gaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttctt |
67 |
T |
|
| Q |
506 |
ccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttc |
559 |
Q |
| |
|
||| |||| | ||| ||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
66 |
ccacaccaaactcttttgtctcatttcttttcctttttctccttccatcatttc |
13 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 40930746 - 40930673
Alignment:
| Q |
222 |
agataagtatagttttaccaacaattgttccatccaagaattgaattctgattctcccaaacgatttgtcattt |
295 |
Q |
| |
|
||||||||||||||| || || ||||||| ||||||||||| ||||| ||||||| ||||||||| ||||||| |
|
|
| T |
40930746 |
agataagtatagtttgacaaataattgtttcatccaagaatcaaattcggattctctcaaacgattcgtcattt |
40930673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 38360918 - 38360850
Alignment:
| Q |
201 |
ataatctagagtttggttgtgagataagtatagttttaccaacaattgttccatccaagaattgaattc |
269 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| |||| |||| ||||||| ||||||||||||| |
|
|
| T |
38360918 |
ataatctagagtttgattgtgaggtaagtatagttggtccaagaattattccatctaagaattgaattc |
38360850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 747
Target Start/End: Complemental strand, 41511491 - 41511448
Alignment:
| Q |
704 |
ttcaagtgtagaattccaaccacaatgagtcaagaatcccccaa |
747 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
41511491 |
ttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaa |
41511448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 39818662 - 39818701
Alignment:
| Q |
298 |
tgaagcttattaactatttgagttcaactgtttggttaaa |
337 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39818662 |
tgaagcttattaactatttgagttcaattgcttggttaaa |
39818701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 3618 - 3656
Alignment:
| Q |
273 |
ttctcccaaacgatttgtcatttggtgaagcttattaac |
311 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
3618 |
ttctcccaaacgatttgtcatttggtaaagctcattaac |
3656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 29453266 - 29453220
Alignment:
| Q |
289 |
gtcatttggtgaagcttattaactatttgagttcaactgtttggtta |
335 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||| |||||||||| |
|
|
| T |
29453266 |
gtcatttggtgaagttcattaactatttgagctcaattgtttggtta |
29453220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 676
Target Start/End: Original strand, 26672102 - 26672139
Alignment:
| Q |
639 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
676 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26672102 |
ctacaattagtttgttgttcagcaaaaaaaggccaaca |
26672139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 676
Target Start/End: Original strand, 26901388 - 26901425
Alignment:
| Q |
639 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
676 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26901388 |
ctacaattagtttgttgttcagcaaaaaaaggccaaca |
26901425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 676
Target Start/End: Original strand, 26943700 - 26943737
Alignment:
| Q |
639 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
676 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26943700 |
ctacaattagtttgttgttcagcaaaaaaaggccaaca |
26943737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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