View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7823_low_22 (Length: 228)

Name: NF7823_low_22
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7823_low_22
NF7823_low_22
[»] chr4 (13 HSPs)
chr4 (1-228)||(17416407-17416634)
chr4 (2-228)||(26500175-26500400)
chr4 (40-228)||(10388517-10388705)
chr4 (1-228)||(40813676-40813906)
chr4 (124-228)||(37707376-37707480)
chr4 (42-228)||(1799102-1799288)
chr4 (125-173)||(53756767-53756815)
chr4 (2-76)||(43809437-43809511)
chr4 (141-174)||(2792312-2792345)
chr4 (124-173)||(4305736-4305785)
chr4 (141-174)||(39041312-39041345)
chr4 (141-173)||(31050700-31050732)
chr4 (135-167)||(39421045-39421077)
[»] chr5 (15 HSPs)
chr5 (1-224)||(25341658-25341882)
chr5 (40-228)||(2707017-2707205)
chr5 (41-225)||(29685785-29685969)
chr5 (40-228)||(35847053-35847242)
chr5 (40-228)||(42742273-42742460)
chr5 (40-118)||(40377661-40377739)
chr5 (125-228)||(18557493-18557595)
chr5 (54-228)||(3204240-3204413)
chr5 (42-228)||(39368818-39369004)
chr5 (40-118)||(25362339-25362417)
chr5 (2-92)||(34346029-34346120)
chr5 (135-173)||(13954266-13954304)
chr5 (135-173)||(34378109-34378147)
chr5 (124-169)||(18593258-18593303)
chr5 (124-173)||(33258903-33258952)
[»] chr3 (17 HSPs)
chr3 (40-228)||(16285022-16285210)
chr3 (124-228)||(2782090-2782194)
chr3 (40-228)||(17324094-17324282)
chr3 (57-228)||(45181550-45181721)
chr3 (2-118)||(29016545-29016659)
chr3 (124-228)||(3968571-3968675)
chr3 (124-228)||(4000130-4000234)
chr3 (127-173)||(20710732-20710778)
chr3 (135-228)||(30127218-30127311)
chr3 (135-173)||(14879446-14879484)
chr3 (135-173)||(17550968-17551006)
chr3 (135-173)||(19176513-19176551)
chr3 (135-173)||(34475786-34475824)
chr3 (125-222)||(18983225-18983321)
chr3 (144-200)||(24099368-24099424)
chr3 (135-167)||(37123399-37123431)
chr3 (135-167)||(47945723-47945755)
[»] chr1 (16 HSPs)
chr1 (40-181)||(4397407-4397548)
chr1 (124-228)||(13987577-13987681)
chr1 (2-228)||(38709909-38710133)
chr1 (59-228)||(4391563-4391732)
chr1 (128-208)||(38564878-38564957)
chr1 (104-224)||(28887732-28887854)
chr1 (124-173)||(46692840-46692889)
chr1 (141-173)||(27031878-27031910)
chr1 (135-175)||(30655569-30655609)
chr1 (135-173)||(5459172-5459210)
chr1 (135-173)||(7857664-7857702)
chr1 (135-173)||(9313321-9313359)
chr1 (135-173)||(31585792-31585830)
chr1 (135-173)||(41920463-41920501)
chr1 (135-173)||(46814499-46814537)
chr1 (127-175)||(17891520-17891568)
[»] chr8 (13 HSPs)
chr8 (40-228)||(38387874-38388062)
chr8 (40-213)||(46163-46336)
chr8 (84-228)||(31179808-31179952)
chr8 (2-117)||(4489625-4489739)
chr8 (124-228)||(40531190-40531292)
chr8 (125-228)||(544372-544475)
chr8 (42-115)||(23264777-23264850)
chr8 (54-176)||(33967334-33967458)
chr8 (124-164)||(36796626-36796666)
chr8 (135-173)||(9519510-9519548)
chr8 (135-173)||(24995427-24995465)
chr8 (135-173)||(31207394-31207432)
chr8 (141-173)||(34389043-34389075)
[»] chr2 (13 HSPs)
chr2 (54-228)||(4161969-4162144)
chr2 (42-227)||(4397369-4397554)
chr2 (124-228)||(9560809-9560913)
chr2 (40-228)||(41958189-41958376)
chr2 (2-228)||(42048114-42048341)
chr2 (125-227)||(44888341-44888443)
chr2 (40-228)||(37128860-37129048)
chr2 (42-208)||(23665340-23665509)
chr2 (141-173)||(10173616-10173648)
chr2 (135-173)||(10524108-10524146)
chr2 (135-173)||(14405209-14405247)
chr2 (135-173)||(22885165-22885203)
chr2 (141-173)||(1269494-1269526)
[»] chr7 (15 HSPs)
chr7 (42-228)||(6003330-6003516)
chr7 (127-228)||(27993560-27993661)
chr7 (104-208)||(46262119-46262224)
chr7 (44-208)||(25153197-25153362)
chr7 (125-228)||(35206715-35206818)
chr7 (54-172)||(17802765-17802885)
chr7 (124-167)||(3478369-3478412)
chr7 (135-173)||(6584920-6584958)
chr7 (135-173)||(9349760-9349798)
chr7 (135-173)||(13311850-13311888)
chr7 (135-173)||(34389973-34390011)
chr7 (135-173)||(38306272-38306310)
chr7 (135-173)||(38485567-38485605)
chr7 (143-208)||(2570136-2570201)
chr7 (135-167)||(10244199-10244231)
[»] chr6 (7 HSPs)
chr6 (125-228)||(7546451-7546554)
chr6 (141-173)||(16510339-16510371)
chr6 (141-228)||(12129174-12129260)
chr6 (135-206)||(34105391-34105462)
chr6 (135-173)||(26216051-26216089)
chr6 (135-173)||(26534751-26534789)
chr6 (138-175)||(34092804-34092841)
[»] scaffold0068 (1 HSPs)
scaffold0068 (135-173)||(35803-35841)
[»] scaffold0620 (1 HSPs)
scaffold0620 (138-175)||(8138-8175)
[»] scaffold0200 (1 HSPs)
scaffold0200 (141-173)||(19394-19426)
[»] scaffold0119 (1 HSPs)
scaffold0119 (141-173)||(42176-42208)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 17416407 - 17416634
Alignment:
Q  1 tcaccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatc 100  Q
    |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17416407 tcactaccaacagagttcaatttagcacccgataactatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatc 17416506  T
Q  101 acaaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccct 200  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  17416507 acaaaagcctaaaaggacataggcaaaaaactagctcctgatctcgaatcaaaagtgatcggcccactaggctctcgacaccaatcatttaggcacccct 17416606  T
Q  201 caactcacaaaccactagagcagacacc 228  Q
    |||||||| ||||||||||| |||||||    
T  17416607 caactcacgaaccactagagtagacacc 17416634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 26500175 - 26500400
Alignment:
Q  2 caccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatca 101  Q
    |||||||||||| | | |||  |||||||||| |||  ||||||||||||| ||||||||||||||||||||||  || ||||| |||||||||||||||    
T  26500175 caccaccaacagtggtgaataaagcacccgat-attgattttgcttcaaacgttcagcttcgaccaccactcaagttccggtctatcggaggagacatca 26500273  T
Q  102 caaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctc 201  Q
    ||| ||||||||||||| |  |  | ||||| |||||| | ||||||||||||| ||||| ||||| ||||| | ||||| | |||   |||||||||||    
T  26500274 caacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagacttccgacacaagtcaaaaaggcacccctc 26500373  T
Q  202 aactcacaaaccactagagcagacacc 228  Q
    ||||||| ||||||||||||| |||||    
T  26500374 aactcacgaaccactagagcatacacc 26500400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 10388705 - 10388517
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    ||||||||||||| || ||||||||||||||||||| ||| ||||| || ||||||||||||||| ||||||||||||| |  |  | ||||| ||||||    
T  10388705 ttttgcttcaaacgtttagcttcgaccaccactcaagatccggtctatcagaggagacatcacaacagcctaaaaggacctgagtcataaacttgctccc 10388606  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     | ||||||||||||||||||||||||| ||||||  ||| | | |||   || || |||||||||||| || ||||||||||||||||    
T  10388605 gacctcgaatcaaaagtgatcggcccacaagactctcgacgcaagtcaaaaagacatccctcaactcacgaagcactagagcagacacc 10388517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 40813676 - 40813906
Alignment:
Q  1 tcaccaccaacagagttcaatttagcacccgatgattattt-ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacat 99  Q
    ||||||||||||||| |||||  |||| ||||  |  |||| |||||||||||| |||| | ||||||||||||||| || |||  | |||||||||||     
T  40813676 tcaccaccaacagagatcaataaagcagccgacaaagatttgttgcttcaaacaatcagatgcgaccaccactcaacttccggtaagacggaggagacaa 40813775  T
Q  100 caca-aaagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacc 197  Q
    |  | |||||||||||| || | || ||||||| | |||||| ||||||||||||||||||||||||||| ||||||| ||| | ||||||  |||||||    
T  40813776 ccaacaaagcctaaaagaacctgagtcaaaaaattggctcccgatctcgaatcaaaagtgatcggcccaccagactcccgacgcaaatcataaaggcacc 40813875  T
Q  198 cctcaactcacaaaccactagagcagacacc 228  Q
    | |||| |||| |||||||||||||||||||    
T  40813876 cttcaattcacgaaccactagagcagacacc 40813906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 37707376 - 37707480
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 223  Q
    ||||||||||| |||  ||||||||||||||||||||||||||| ||||||| |||||  | ||   |||||||||||||||||| |||||| |||||||    
T  37707376 caaaaaactagttcctgatctcgaatcaaaagtgatcggcccaccagactcccgacacatagcaaaaaggcacccctcaactcacgaaccaccagagcag 37707475  T
Q  224 acacc 228  Q
    |||||    
T  37707476 acacc 37707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 1799288 - 1799102
Alignment:
Q  42 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcccta 141  Q
    |||||||||||  |||||||||||||||||||||  | |||| | |||||||||||||||||| ||||||||||||| |  |  | ||||| |||||  |    
T  1799288 ttgcttcaaacgatcagcttcgaccaccactcaaattttggtttatcggaggagacatcacaatagcctaaaaggacctgagacacaaacttgctcctga 1799189  T
Q  142 tctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     || |||||||||| | | || | || |||||||| |||| | |||   |||||||||||||||||| ||||||  |||||||||||    
T  1799188 cctagaatcaaaagcgtttggtcaacaagactccttacacaagtcaaaaaggcacccctcaactcacgaaccaccggagcagacacc 1799102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 53756815 - 53756767
Alignment:
Q  125 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    |||||||||||| || ||||||||||||||||||||||||||| |||||    
T  53756815 aaaaaactagcttccgatctcgaatcaaaagtgatcggcccaccagact 53756767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 43809511 - 43809437
Alignment:
Q  2 caccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaac 76  Q
    ||||| |||| |||||||||| |||||||||| || ||||||| ||||||| ||||  ||||||||||| |||||    
T  43809511 caccaacaacggagttcaattaagcacccgataatgatttttgtttcaaacgttcaaattcgaccaccaatcaac 43809437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 2792312 - 2792345
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagactc 174  Q
    |||||||||||||||||||||||| |||||||||    
T  2792312 atctcgaatcaaaagtgatcggcctactagactc 2792345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 4305785 - 4305736
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||| |||||    
T  4305785 caaagaactaactcccgatctcgaatcaaaagtgatcgccccaccagact 4305736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 39041312 - 39041345
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagactc 174  Q
    ||||||||||||||||||||||||||| ||||||    
T  39041312 atctcgaatcaaaagtgatcggcccaccagactc 39041345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 31050700 - 31050732
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||||||||||||||||||||||||| |||||    
T  31050700 atctcgaatcaaaagtgatcggcccaccagact 31050732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 39421045 - 39421077
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccac 167  Q
    ||||| |||||||||||||||||||||||||||    
T  39421045 ctcccgatctcgaatcaaaagtgatcggcccac 39421077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 25341882 - 25341658
Alignment:
Q  1 tcaccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatc 100  Q
    ||||||||||||||||| |||| |||||||||  || |||||||||  |||| ||||||||| ||||||| ||||| || |||| |||||||||||||||    
T  25341882 tcaccaccaacagagtttaattaagcacccgaaaataatttttgctcaaaacgttcagcttctaccaccaatcaacttccggtcagtcggaggagacatc 25341783  T
Q  101 acaaaagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccc 199  Q
    |||||||||||||||||| |  | |||||| ||| ||| | ||||| ||||||||||||||||||||| ||||||| |||||  |||||  |||||||||    
T  25341782 acaaaagcctaaaaggacctgtgtcaaaaatctaactctcaatctcaaatcaaaagtgatcggcccaccagactcccgacacacatcatcaaggcacccc 25341683  T
Q  200 tcaactcacaaaccactagagcaga 224  Q
    | ||||||| || ||| ||||||||    
T  25341682 tgaactcacgaagcaccagagcaga 25341658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 2707205 - 2707017
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    ||||||||||||| |||||||| |||||||||||||  |  | ||| ||||||||||||   |||||||||||||||||||  |  | ||||||||||||    
T  2707205 ttttgcttcaaacgttcagctttgaccaccactcaagttacgatctttcggaggagacaatgcaaaagcctaaaaggacatgagtcacaaactagctccc 2707106  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     | ||||||||||||||||||||  ||||||||||| ||||| | ||||| | |||||||||||||||| ||||||  |||||| ||||    
T  2707105 gacctcgaatcaaaagtgatcggttcactagactcccgacacaagtcattaaagcacccctcaactcacgaaccaccggagcaggcacc 2707017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 225
Target Start/End: Complemental strand, 29685969 - 29685785
Alignment:
Q  41 tttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccct 140  Q
    |||||||||||| ||||||||| |||||||| |||  || ||||| ||||||||||| |||||||||||||||||||  |  |  | ||||||||||||     
T  29685969 tttgcttcaaacgttcagcttccaccaccacacaaattccggtctatcggaggagacttcacaaaagcctaaaaggatctgagtcacaaactagctcccg 29685870  T
Q  141 atctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagac 225  Q
    |  |||||||||||||||||| |||| |||||||| |||||   ||||| ||| || ||||||||||| |||||| |||||||||    
T  29685869 acttcgaatcaaaagtgatcgacccattagactcccgacacaggtcattaaggtactcctcaactcacgaaccaccagagcagac 29685785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 35847242 - 35847053
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    ||||||||||||| ||||||||||||||||||||||   | ||||| |||||||||||||||||  |||||||||||||    |  | ||||  ||||||    
T  35847242 ttttgcttcaaacgttcagcttcgaccaccactcaagtcccggtctatcggaggagacatcacagcagcctaaaaggacccgagtcacaaacgtgctccc 35847143  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatc-atttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     | ||||||||||||  ||||||||||| | ||||| ||||| | || |   |||||||| |||||||||||||||| ||||||||||||    
T  35847142 gacctcgaatcaaaatcgatcggcccacaaaactcccgacacaagtcaaaaaaggcacccatcaactcacaaaccaccagagcagacacc 35847053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 42742273 - 42742460
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    |||| |||||||| | || ||| |||||||||||||  ||  |||| |||||||||||||||||| |||||||||||||||  |  | ||||| ||||||    
T  42742273 ttttccttcaaacgtacaactttgaccaccactcaagttccagtctatcggaggagacatcacaacagcctaaaaggacatgagtcacaaacttgctccc 42742372  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     | ||||||||||||| |||| |||||| ||||||| ||||| | |||   ||||||||| |||| ||| |||||| ||||||||||||    
T  42742373 gacctcgaatcaaaagcgatc-gcccacaagactcccgacacaagtcaaaaaggcaccccacaacccacgaaccaccagagcagacacc 42742460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 40377739 - 40377661
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggac 118  Q
    |||| |||||||| ||||| ||| |||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||    
T  40377739 ttttacttcaaacgttcaggttccaccaccactcaagatccggtctatcggaggagacatcacaacagcctaaaaggac 40377661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 18557595 - 18557493
Alignment:
Q  125 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcaga 224  Q
    |||||||||||||   |||||||||||||||||||||||||| |||||||| ||||| |||||    ||||||||||||||||| | |||| |||| |||    
T  18557595 aaaaaactagctctggatctcgaatcaaaagtgatcggccca-tagactcccgacacaaatcaaaacggcacccctcaactcacgacccaccagagtaga 18557497  T
Q  225 cacc 228  Q
    ||||    
T  18557496 cacc 18557493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 3204413 - 3204240
Alignment:
Q  54 ttcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaa 153  Q
    |||||||| |||||||||||||  ||| || | |||||||||||||||||| |||||||||| |  || |  | ||||| |||||| | |||||||||||    
T  3204413 ttcagctttgaccaccactcaagttctagtatatcggaggagacatcacaacagcctaaaagaatctaagtcacaaacttgctcccgacctcgaatcaaa 3204314  T
Q  154 agtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
    |  ||| || |||| ||||| ||||||| | | |   |||||||||||||||||| | |||| |||||| |||||    
T  3204313 aacgattggtccacaagact-ctgacacaagttaaaaaggcacccctcaactcacgagccaccagagcatacacc 3204240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 39369004 - 39368818
Alignment:
Q  42 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcccta 141  Q
    ||||||||||| |||||||||||||||||||||    | ||||   | ||||||||| ||||| | |||||||| || |  |  ||||||| |||||| |    
T  39369004 ttgcttcaaacgttcagcttcgaccaccactcacgtcccggtcgcactgaggagacaacacaacaacctaaaagaacctgagtcaaaaacttgctcccga 39368905  T
Q  142 tctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     ||||||||||||| | ||||||||| ||||||| ||||| | |||   || |||| |||||||||| |||||| || | |||||||    
T  39368904 cctcgaatcaaaagcggtcggcccacaagactcccgacacaagtcaaaaagacacctctcaactcacgaaccaccagggaagacacc 39368818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 25362417 - 25362339
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggac 118  Q
    ||||||||||||| ||||||||| | ||||||||||  || ||||| ||   ||||||||||||| |||||||||||||    
T  25362417 ttttgcttcaaacgttcagcttcaatcaccactcaagttccggtctatcaatggagacatcacaacagcctaaaaggac 25362339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 34346029 - 34346120
Alignment:
Q  2 caccaccaacagagttcaatttagcacccgatgatta-tttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggag 92  Q
    ||||||||||||||||||||| |||||||||| |  | || ||| ||||||| ||||| || ||||| || ||||| || ||||||||||||    
T  34346029 caccaccaacagagttcaattaagcacccgataaggacttgttgattcaaacgttcagatttgaccatcaatcaacttccggtctgtcggag 34346120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 13954266 - 13954304
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  13954266 ctcccgatctcgaatcaaaagtgatcggcccaccagact 13954304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 34378147 - 34378109
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  34378147 ctcccgatctcgaatcaaaagtgatcggcccaccagact 34378109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 18593303 - 18593258
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccacta 169  Q
    |||| ||||| ||||| |||||||||||||||||||| ||||||||    
T  18593303 caaagaactaactcccgatctcgaatcaaaagtgatctgcccacta 18593258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 33258903 - 33258952
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    |||| ||||| ||||  ||||||||||||||||||||||||||| |||||    
T  33258903 caaagaactaactcctgatctcgaatcaaaagtgatcggcccaccagact 33258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 16285210 - 16285022
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    ||||||||||||  |||||||| |||||||||||||  || ||| | ||||||||| | |||||| ||||||||||||| |  |    ||||| ||||||    
T  16285210 ttttgcttcaaatgttcagctttgaccaccactcaagttccggtttatcggaggagccgtcacaacagcctaaaaggacctgagtcgcaaacttgctccc 16285111  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     | ||||||||||||| ||||||||||| ||||||| ||||| | |||   |||||||||||||||||| |||||| ||||||||||||    
T  16285110 gacctcgaatcaaaagcgatcggcccacaagactccagacactagtcaaaaaggcacccctcaactcacgaaccacaagagcagacacc 16285022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 2782090 - 2782194
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 223  Q
    ||||||||| |||||| ||||  ||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  2782090 caaaaaactggctcccgatctaaaatcaaaagtgatcgtcccaccagactctcgacacaaatcattaaggcacccctcaactcacaaaccaccagagcag 2782189  T
Q  224 acacc 228  Q
    |||||    
T  2782190 acacc 2782194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 17324094 - 17324282
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    ||||||||||||| |||||||||||||||||||| |  ||  || | |||||||||||||||||| ||| ||||||||| || |  | ||||| ||||||    
T  17324094 ttttgcttcaaacgttcagcttcgaccaccactctagttccagtatatcggaggagacatcacaatagcttaaaaggacctaagtcagaaacttgctccc 17324193  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     | ||||||||||||| ||||||||||| ||||||  ||||  | | |   |||||||||||||||||| ||||||  ||| |||||||    
T  17324194 gacctcgaatcaaaagagatcggcccacaagactcacgacataagtaaaaaaggcacccctcaactcacgaaccaccggagtagacacc 17324282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 45181721 - 45181550
Alignment:
Q  57 agcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaaagt 156  Q
    |||||||||||||||| ||  || ||||| ||| |||||||||||||| ||||||||||||| |  |  | ||||| ||| || | |||||||||||||     
T  45181721 agcttcgaccaccacttaagttccggtctatcgaaggagacatcacaacagcctaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagc 45181622  T
Q  157 gatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
    ||| ||||||| ||||||| ||||  | |||   |||||||||||||||||| |||||| ||||||||||||    
T  45181621 gattggcccacaagactcccgacaaaagtcaaaaaggcacccctcaactcacgaaccaccagagcagacacc 45181550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 29016659 - 29016545
Alignment:
Q  2 caccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatca 101  Q
    ||||| ||||| |||||||||  ||||||||| || ||||  |||||||||||| |||||||||||||||||||  || ||||| ||||||||||||||     
T  29016659 caccatcaacatagttcaattacgcacccgataatgattt--gcttcaaacattgagcttcgaccaccactcaaattccggtctatcggaggagacatcc 29016562  T
Q  102 caaaagcctaaaaggac 118  Q
    ||||| |||||||||||    
T  29016561 caaaaacctaaaaggac 29016545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 3968571 - 3968675
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 223  Q
    |||||||||||||||  |||||||| |||||| ||| || |||| ||||||| ||||| ||||||  |||||||||||||||||| |||||| |||||||    
T  3968571 caaaaaactagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcag 3968670  T
Q  224 acacc 228  Q
    |||||    
T  3968671 acacc 3968675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 4000234 - 4000130
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 223  Q
    |||||||||||||||  |||||||| |||||| ||| || |||| ||||||| ||||| ||||||  |||||||||||||||||| |||||| |||||||    
T  4000234 caaaaaactagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcag 4000135  T
Q  224 acacc 228  Q
    |||||    
T  4000134 acacc 4000130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 20710732 - 20710778
Alignment:
Q  127 aaaactagctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  20710732 aaaactagctcccgatctcgaatcaaaagtgatcggcccaccagact 20710778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 30127311 - 30127218
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
    ||||| ||||||||||||||| ||||||| ||| ||||||| || || ||||| |   ||||||||||| ||  ||||||||| ||||||||||    
T  30127311 ctcccgatctcgaatcaaaagcgatcggctcaccagactcccgaaacaaatcaatagagcacccctcaattcctaaaccactatagcagacacc 30127218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 14879484 - 14879446
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  14879484 ctcccgatctcgaatcaaaagtgatcggcccaccagact 14879446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 17551006 - 17550968
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  17551006 ctcccgatctcgaatcaaaagtgatcggcccaccagact 17550968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 19176551 - 19176513
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  19176551 ctcccgatctcgaatcaaaagtgatcggcccaccagact 19176513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 34475786 - 34475824
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  34475786 ctcccgatctcgaatcaaaagtgatcggcccaccagact 34475824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 18983321 - 18983225
Alignment:
Q  125 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagca 222  Q
    ||||||||||||||  ||||||||||| || ||||||| |||  ||||||  |||||  |||| | ||||||| |||||||||||| |||| ||||||    
T  18983321 aaaaaactagctccg-atctcgaatcataattgatcggtccatcagactctcgacacagatcaataaggcaccactcaactcacaacccaccagagca 18983225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 24099368 - 24099424
Alignment:
Q  144 tcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccct 200  Q
    |||||||||||||||||||||||| ||||||   | || ||||||| ||||||||||    
T  24099368 tcgaatcaaaagtgatcggcccaccagactctataaacaaatcattaaggcacccct 24099424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 37123431 - 37123399
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccac 167  Q
    ||||| |||||||||||||||||||||||||||    
T  37123431 ctcccaatctcgaatcaaaagtgatcggcccac 37123399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 47945755 - 47945723
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccac 167  Q
    ||||| |||||||||||||||||||||||||||    
T  47945755 ctcccgatctcgaatcaaaagtgatcggcccac 47945723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 181
Target Start/End: Original strand, 4397407 - 4397548
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||| |  |  | |||||  |||||    
T  4397407 ttttgcttcaaacgttcagcttcgaccaccactcaagatccggtctatcggaggagacatcacaacagcctaaaaggacctgagtcacaaacttactccc 4397506  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacac 181  Q
     | ||||||||||||| ||||||| ||  ||||||| |||||    
T  4397507 gaactcgaatcaaaagcgatcggcacataagactcccgacac 4397548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 13987681 - 13987577
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 223  Q
    |||||||||||||||| |||||||| |||||| ||| ||||||| ||| ||| ||||| ||||||  |||||||||||||||||| |||||| |||||||    
T  13987681 caaaaaactagctcccgatctcgaagcaaaagcgattggcccaccagattcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcag 13987582  T
Q  224 acacc 228  Q
    |||||    
T  13987581 acacc 13987577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 38710133 - 38709909
Alignment:
Q  2 caccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatca 101  Q
    |||| ||||||| | ||||||| |||||| ||| | ||||| ||||||| | ||||||||||||||||||||||  || ||||| |||||||||||||||    
T  38710133 caccgccaacagtgatcaatttggcacccaatggtgatttt-gcttcaagcgttcagcttcgaccaccactcaagttccggtctatcggaggagacatca 38710035  T
Q  102 caaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctc 201  Q
    ||| | ||||||||||| |  |  | ||||| |||||| | ||||||||||||| |||| |||||  ||||||| || || |  ||   |||||||||||    
T  38710034 caacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcagccca-aagactcccgaaacaaggcaaaaaggcacccctc 38709936  T
Q  202 aactcacaaaccactagagcagacacc 228  Q
    ||||||| |||||| ||| || |||||    
T  38709935 aactcacgaaccaccagaacaaacacc 38709909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 228
Target Start/End: Complemental strand, 4391732 - 4391563
Alignment:
Q  59 cttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccctatctcgaatcaaaagtga 158  Q
    |||||||||||||||||  ||  |||| |||||||||||||||||| ||||||||||  |  || || |||||| |||||| | | ||||||||||| ||    
T  4391732 cttcgaccaccactcaagttcctgtctatcggaggagacatcacaacagcctaaaagacctgagtcacaaaacttgctcccgaccccgaatcaaaagcga 4391633  T
Q  159 tcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
    | ||||||| ||||||| ||||| |  ||   | |||||||||||||||| |||||| ||| ||||||||    
T  4391632 ttggcccacaagactcccgacacaaggcaaaaatgcacccctcaactcacgaaccaccagaacagacacc 4391563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 38564957 - 38564878
Alignment:
Q  128 aaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcac 208  Q
    |||| ||||||| ||||||||||||||| ||||||||||| |||||||| |||| |||||   ||||||||||||||||||    
T  38564957 aaaccagctcccgatctcgaatcaaaagcgatcggcccacgagactcctaacacaaatca-aaaggcacccctcaactcac 38564878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 28887854 - 28887732
Alignment:
Q  104 aaagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacac-caatcatttaggcacccctc 201  Q
    |||||||||||| || | || |||||||||||| ||  |||||||||||| |||| ||||||||| ||||||| |||||  |||| |  |||||||||||    
T  28887854 aaagcctaaaagtacctgagtcaaaaaactagcgcctgatctcgaatcaagagtggtcggcccaccagactcccgacacaaaatcctaaaggcacccctc 28887755  T
Q  202 aactcacaaaccactagagcaga 224  Q
    ||||||  |||||| ||||||||    
T  28887754 aactcaagaaccaccagagcaga 28887732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 46692840 - 46692889
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    |||| ||||| ||||| ||||||||||||||||||||||||||| |||||    
T  46692840 caaagaactaactcccgatctcgaatcaaaagtgatcggcccaccagact 46692889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 27031878 - 27031910
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagact 173  Q
    |||||||||||||||||||||||||||||||||    
T  27031878 atctcgaatcaaaagtgatcggcccactagact 27031910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 30655609 - 30655569
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagactcc 175  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  30655609 ctcccgatctcgaatcaaaagcgatcggcccactagactcc 30655569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 5459210 - 5459172
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  5459210 ctcccgatctcgaatcaaaagtgatcggcccaccagact 5459172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 7857702 - 7857664
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  7857702 ctcccgatctcgaatcaaaagtgatcggcccaccagact 7857664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 9313321 - 9313359
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  9313321 ctcccgatctcgaatcaaaagtgatcagcccactagact 9313359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 31585792 - 31585830
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  31585792 ctcccgatctcgaatcaaaagtgatcggcccaccagact 31585830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 41920501 - 41920463
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  41920501 ctcccgatctcgaatcaaaagtgatcggcccaccagact 41920463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 46814499 - 46814537
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  46814499 ctcccgatctcgaatcaaaagtgatcggcccaccagact 46814537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 17891568 - 17891520
Alignment:
Q  127 aaaactagctccctatctcgaatcaaaagtgatcggcccactagactcc 175  Q
    |||||| |||||| |||||||||||||||||||||| |||  |||||||    
T  17891568 aaaacttgctcccaatctcgaatcaaaagtgatcggtccatcagactcc 17891520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 38388062 - 38387874
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    ||||||||||||| ||||||||||||||||||||||   || |||| || || |||||||||||| ||||||||||||| |  |  | ||||| |||||     
T  38388062 ttttgcttcaaacgttcagcttcgaccaccactcaagtcctagtctatcagatgagacatcacaatagcctaaaaggacctgagtcacaaacttgctcct 38387963  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     | || |||||||||||||| ||||||| ||||||| ||||  | |||   |||||||||||||||||| |||||| |||||| |||||    
T  38387962 gaccttgaatcaaaagtgattggcccacaagactcccgacataagtcaaaaaggcacccctcaactcacgaaccaccagagcaaacacc 38387874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 213
Target Start/End: Original strand, 46163 - 46336
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    ||||||||||||| |||| ||| |||||||||||||  ||  |||| |||||||||||||||||| | ||||||||||| |  |  | ||||| ||||||    
T  46163 ttttgcttcaaacgttcaactttgaccaccactcaagttccagtctatcggaggagacatcacaacaacctaaaaggacctgagtcagaaacttgctccc 46262  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaacc 213  Q
     | || |||||||||| ||| ||||||| ||||||| ||||| | |||   |||||||||||||||||| ||||    
T  46263 gacctggaatcaaaagcgattggcccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaacc 46336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 31179808 - 31179952
Alignment:
Q  84 ctgtcggaggagacatcacaaaagcctaaaaggacatagg-caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacacc 182  Q
    ||||||||||||||| |  || ||||||||||||| || | |||||| || |||||| |||||  |||||||||||||||||||| ||| |||  ||||     
T  31179808 ctgtcggaggagacacccaaatagcctaaaaggacctaagtcaaaaatctggctcccaatctcagatcaaaagtgatcggcccaccagattcccaacaca 31179907  T
Q  183 aatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
    ||||||| ||||| |||| ||||||  |||||||||||||||||||    
T  31179908 aatcattaaggca-cccttaactcatgaaccactagagcagacacc 31179952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 4489625 - 4489739
Alignment:
Q  2 caccaccaacagagttcaatttagcacccgatgattatttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatca 101  Q
    ||||||||| || ||| |||| ||||| |||| || ||||| ||||||||| || |||||| ||||||||||||  ||  |||| |||||||||||||||    
T  4489625 caccaccaatagtgttaaattaagcactcgataatgatttt-gcttcaaacgtttagcttctaccaccactcaagttccagtctatcggaggagacatca 4489723  T
Q  102 caaaagcctaaaagga 117  Q
    ||||||||||||||||    
T  4489724 caaaagcctaaaagga 4489739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 40531292 - 40531190
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 223  Q
    |||||||||||||||| ||||||||||||||||||||||||||  |||||  |||||| |||||    ||||||||||||||||  | |||| |||||||    
T  40531292 caaaaaactagctcccgatctcgaatcaaaagtgatcggcccatcagact--tgacacaaatcaaaacggcacccctcaactcaagacccaccagagcag 40531195  T
Q  224 acacc 228  Q
    |||||    
T  40531194 acacc 40531190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 544372 - 544475
Alignment:
Q  125 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcaga 224  Q
    |||||||||||| || |||||||||| |||||||||| ||||| ||||||| ||||| |||||    |||| || ||||||||||| |||| ||||||||    
T  544372 aaaaaactagcttccgatctcgaatctaaagtgatcgacccaccagactcccgacacaaatcaaaacggcatccgtcaactcacaatccaccagagcaga 544471  T
Q  225 cacc 228  Q
    ||||    
T  544472 cacc 544475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 23264850 - 23264777
Alignment:
Q  42 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaag 115  Q
    |||||||||||  |||| ||||||||||||| ||| || | | |||||||||||||| || |||||||||||||    
T  23264850 ttgcttcaaacgatcagattcgaccaccacttaacttccgatatgtcggaggagacaccaaaaaagcctaaaag 23264777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 33967458 - 33967334
Alignment:
Q  54 ttcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaa-aagcctaaaaggacatagg-caaaaaactagctccctatctcgaatca 151  Q
    ||||| ||||||||||| ||||| ||| |||  |||||| ||||| || || || ||||||| ||| || | ||||||  | |||||  |||||||||||    
T  33967458 ttcagattcgaccaccaatcaacttctagtcaatcggagaagacaccaaaataaacctaaaaagacctaagtcaaaaagttggctcctgatctcgaatca 33967359  T
Q  152 aaagtgatcggcccactagactcct 176  Q
    |||||||||||||||| ||||||||    
T  33967358 aaagtgatcggcccaccagactcct 33967334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 36796666 - 36796626
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcc 164  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  36796666 caaaaaactagttcccgatctcgaatcaaaagtgatcggcc 36796626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 9519548 - 9519510
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  9519548 ctcccgatctcgaatcaaaactgatcggcccactagact 9519510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 24995427 - 24995465
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  24995427 ctcccgatctcgaatcaaaagtgatcggcccaccagact 24995465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 31207394 - 31207432
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  31207394 ctcccgatctcgaatcaaaagtgatcggcccaccagact 31207432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 34389043 - 34389075
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||||||||||||||||||||||||| |||||    
T  34389043 atctcgaatcaaaagtgatcggcccaccagact 34389075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 4161969 - 4162144
Alignment:
Q  54 ttcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaa-aagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatca 151  Q
    ||||| ||||||||||| ||||| ||| ||||||||||| ||||| || || |||||||||| ||| | |  |||||| || |||||| |||||||||||    
T  4161969 ttcagattcgaccaccaatcaacttctagtctgtcggagaagacaccaaaataagcctaaaaagacctgactcaaaaagctggctcccgatctcgaatca 4162068  T
Q  152 aaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
    |||||||||||||||| |||||||  |||| |||||  ||||||||||||||||| | |||||| |||||| |||||    
T  4162069 aaagtgatcggcccaccagactcccaacacaaatca-ctaggcacccctcaactctcgaaccaccagagcatacacc 4162144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 4397369 - 4397554
Alignment:
Q  42 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcccta 141  Q
    ||||||||||| | ||||||||||||||||||||  || ||||| |||||||||||||||||| | ||||||||||| |  |  | ||||| |||||| |    
T  4397369 ttgcttcaaacgtacagcttcgaccaccactcaagttccggtctttcggaggagacatcacaacaacctaaaaggacctgagtcacaaacttgctcccga 4397468  T
Q  142 tctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacac 227  Q
     ||||||||||||| |||| |||||| ||||||| || |  | |||    ||||||||||||||||| |||||| | |||||||||    
T  4397469 cctcgaatcaaaagcgatcagcccacaagactcccgagagaagtcaaaatggcacccctcaactcacgaaccaccatagcagacac 4397554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 9560809 - 9560913
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcag 223  Q
    |||||||||||||||| |||||||||||||||||||||| |||| | |||   ||||| ||||||  |||||||||||||||||| ||| || |||||||    
T  9560809 caaaaaactagctcccgatctcgaatcaaaagtgatcggtccaccaaactttcgacacaaatcatcaaggcacccctcaactcacgaactaccagagcag 9560908  T
Q  224 acacc 228  Q
    |||||    
T  9560909 acacc 9560913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 41958376 - 41958189
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    ||||| ||||||  ||||||||||||||||||||||  |  ||||| || |||||||| | |||| || |||||||||| |  |  | ||||| ||| ||    
T  41958376 ttttgtttcaaatgttcagcttcgaccaccactcaagtttcggtctatcagaggagacgttacaacagactaaaaggacctgagtcacaaacttgcttcc 41958277  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     | ||||||||||||||| |||||| || ||||||||||||| | |||   |||||||| |||||||||||||||| ||||||||||||    
T  41958276 gacctcgaatcaaaagtggtcggcc-acaagactcctgacacaagtcaaaaaggcacccttcaactcacaaaccaccagagcagacacc 41958189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 42048114 - 42048341
Alignment:
Q  2 caccaccaacagagttcaatttagcacccgatgattattt-ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatc 100  Q
    ||||||||||| ||||||||| |||||| ||  || |||| ||||||||||  ||||  |||||| |||||| ||| |   |||| ||||||||||||||    
T  42048114 caccaccaacaaagttcaattaagcacc-gacaatgatttgttgcttcaaatgttcatattcgacaaccacttaactttcagtctatcggaggagacatc 42048212  T
Q  101 acaaaagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccc 199  Q
       | ||||||||||||| | || ||||||||| ||||||  ||||||||||||||||||| |||||   |||||| ||||  |||||   ||||||| |    
T  42048213 catatagcctaaaaggacttgagtcaaaaaactggctcccggtctcgaatcaaaagtgatcagcccatcggactcccgacagaaatcaacaaggcacctc 42048312  T
Q  200 tcaactcacaaaccactagagcagacacc 228  Q
    ||||||||| |||||| ||||||||||||    
T  42048313 tcaactcacgaaccaccagagcagacacc 42048341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 227
Target Start/End: Original strand, 44888341 - 44888443
Alignment:
Q  125 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcaga 224  Q
    ||||||||||||||| ||||||||| |||| |||||||||||| | ||||| ||||  ||||| | |||||||||||||||||| | |||| ||||||||    
T  44888341 aaaaaactagctcccaatctcgaataaaaaatgatcggcccaccaaactcccgacataaatcaataaggcacccctcaactcacgacccaccagagcaga 44888440  T
Q  225 cac 227  Q
    |||    
T  44888441 cac 44888443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 37128860 - 37129048
Alignment:
Q  40 ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctccc 139  Q
    |||||| |||||  ||||||||||||||||| ||||  |  ||||| |||||||||||||||||| | ||| ||||||| |  |  | ||||| | |||     
T  37128860 ttttgcatcaaatgttcagcttcgaccaccattcaagtttcggtctatcggaggagacatcacaacatcctgaaaggacttgagtcacaaacttgttccg 37128959  T
Q  140 tatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     | ||||||||||||| ||||||||||| |||||||| |||| | |||   |||||||  ||||||||| |||||| ||||||||||||    
T  37128960 gacctcgaatcaaaagcgatcggcccacaagactcctaacacaagtcaaaaaggcacctatcaactcacgaaccaccagagcagacacc 37129048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 208
Target Start/End: Original strand, 23665340 - 23665509
Alignment:
Q  42 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaag-cctaaaaggacatagg-caaaaaa-ctagctcc 138  Q
    |||| ||||||  |||| |||| |||||||||||| |||| | ||||||||||||||  | ||||  |||||||| || |  | ||||||| |||| | |    
T  23665340 ttgcatcaaacgatcagattcgtccaccactcaacttctgatatgtcggaggagacacgaaaaaaaacctaaaagtacttgcgtcaaaaaagctagtttc 23665439  T
Q  139 ctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcac 208  Q
    | ||||||||||||||||||||||||||||||||||| || || ||| |    |||||||||||||||||    
T  23665440 cgatctcgaatcaaaagtgatcggcccactagactcccgatacaaataaaaatggcacccctcaactcac 23665509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 10173616 - 10173648
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagact 173  Q
    |||||||||||||||||||||||||||||||||    
T  10173616 atctcgaatcaaaagtgatcggcccactagact 10173648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 10524146 - 10524108
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  10524146 ctcccgatctcgaatcaaaagtgatcggcccaccagact 10524108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 14405247 - 14405209
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  14405247 ctcccgatctcgaatcaaaagtgatcggcccaccagact 14405209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 22885165 - 22885203
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  22885165 ctcccgatctcgaatcaaaagtgatcggcccaccagact 22885203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 1269526 - 1269494
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||||||||||||||||||||||||| |||||    
T  1269526 atctcgaatcaaaagtgatcggcccaccagact 1269494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 6003516 - 6003330
Alignment:
Q  42 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcccta 141  Q
    ||||||||||| ||||||||||||||||||||||  |   |||| ||||||| |||||||||| ||||||||||||| |  |  | ||| | ||| || |    
T  6003516 ttgcttcaaacgttcagcttcgaccaccactcaagtttcagtctatcggaggcgacatcacaacagcctaaaaggacctgagacacaaatttgcttccga 6003417  T
Q  142 tctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
     ||||||||||||| ||||||||||  ||||||||||||| |||||   ||||| | ||||| |||||||||||  |||||||||||    
T  6003416 cctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaattcacaaaccaccggagcagacacc 6003330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 27993560 - 27993661
Alignment:
Q  127 aaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagaca 226  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||| ||||||  || ||||||||||||||| |||||| |||||| |||    
T  27993560 aaaactagctcccgatctcgaatcaaaagtgatcggtccaccagactcccgacacaaatcataaagacacccctcaactcacgaaccaccagagcaaaca 27993659  T
Q  227 cc 228  Q
    ||    
T  27993660 cc 27993661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 46262119 - 46262224
Alignment:
Q  104 aaagcctaaaaggac-ataggcaaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctca 202  Q
    |||||||||||| || | || ||| |||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||||||   ||||||||||||    
T  46262119 aaagcctaaaagaaccagagtcaagaaactagctcccgatctcgaatcaaaagtgatcggcccaccagactcccaacaccaatcaaaaaggcacccctca 46262218  T
Q  203 actcac 208  Q
    ||||||    
T  46262219 actcac 46262224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 25153362 - 25153197
Alignment:
Q  44 gcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaa--aaaactagctcccta 141  Q
    ||||||||||||||| ||||||||||| ||||| || ||||| | |||||||||| || || || ||||||| || || | ||  |||||| |||  | |    
T  25153362 gcttcaaacattcagattcgaccaccagtcaacttccggtctattggaggagacaccaaaatagtctaaaagaacctaagtaagaaaaactggctttcga 25153263  T
Q  142 tctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcac 208  Q
    ||||||||||||||||||||| |||| ||||||| ||||| ||||| ||| |||||||| |||||||    
T  25153262 tctcgaatcaaaagtgatcggtccaccagactcccgacacaaatca-ttaagcaccccttaactcac 25153197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 35206715 - 35206818
Alignment:
Q  125 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcaga 224  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||||||  |||| ||| |   ||| |||||||||||||  | |||| ||||||||    
T  35206715 aaaaaactagctcccgatctcggatcaaaagtgatcggcccaccagactcccaacacaaataaaaaagggacccctcaactcatgacccaccagagcaga 35206814  T
Q  225 cacc 228  Q
    ||||    
T  35206815 cacc 35206818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 17802765 - 17802885
Alignment:
Q  54 ttcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaa-aagcctaaaaggacat-aggcaaaaaactagctccctatctcgaatca 151  Q
    ||||| ||||||||||| ||||| || |||||||||||| ||||| || || |||||||||| |||   || |||||| || ||| || |||||||||||    
T  17802765 ttcagattcgaccaccaatcaacttccggtctgtcggagaagacaccaaaataagcctaaaaagacccgagtcaaaaagctggcttccgatctcgaatca 17802864  T
Q  152 aaagtgatcggcccactagac 172  Q
    |||||||||||||||| ||||    
T  17802865 aaagtgatcggcccaccagac 17802885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 3478412 - 3478369
Alignment:
Q  124 caaaaaactagctccctatctcgaatcaaaagtgatcggcccac 167  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||    
T  3478412 caaagaactaactcccgatctcgaatcaaaagtgatcggcccac 3478369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 6584958 - 6584920
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  6584958 ctcccgatctcgaatcaaaagtgatcggcccaccagact 6584920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 9349798 - 9349760
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  9349798 ctcccgatctcgaatcaaaagtgatcggcccaccagact 9349760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 13311888 - 13311850
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  13311888 ctcccgatctcgaatcaaaagtgatcggcccaccagact 13311850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 34390011 - 34389973
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  34390011 ctcccgatctcgaatcaaaagtgatcggcccaccagact 34389973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 38306310 - 38306272
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  38306310 ctcccaatctcgaatcaaaagtgatcggcccaccagact 38306272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 38485605 - 38485567
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  38485605 ctcccgatctcgaatcaaaagtgatcggcccaccagact 38485567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 2570201 - 2570136
Alignment:
Q  143 ctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcac 208  Q
    ||||||||||||| |||  |||||| ||||||||||||| | |||   ||||||||||||||||||    
T  2570201 ctcgaatcaaaagcgataagcccaccagactcctgacacaagtcaaaaaggcacccctcaactcac 2570136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 10244231 - 10244199
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccac 167  Q
    ||||| |||||||||||||||||||||||||||    
T  10244231 ctcccgatctcgaatcaaaagtgatcggcccac 10244199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 7546451 - 7546554
Alignment:
Q  125 aaaaaactagctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcaga 224  Q
    |||||||||||| || |||||||||||||||||||||| |||| ||||||   |||||||| |   |||||||||||||||||| |||||| ||||||||    
T  7546451 aaaaaactagcttccgatctcgaatcaaaagtgatcggtccaccagactctcaacaccaataaaaaaggcacccctcaactcacgaaccaccagagcaga 7546550  T
Q  225 cacc 228  Q
    ||||    
T  7546551 cacc 7546554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 16510339 - 16510371
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagact 173  Q
    |||||||||||||||||||||||||||||||||    
T  16510339 atctcgaatcaaaagtgatcggcccactagact 16510371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 12129260 - 12129174
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactcacaaaccactagagcagacacc 228  Q
    |||||||||||||||||||||| |||  ||||| ||||||| ||| | | |||||||| ||||||||| | |||| |||| |||||||    
T  12129260 atctcgaatcaaaagtgatcggaccatcagact-ctgacacaaattaataaggcacccatcaactcacgacccaccagagaagacacc 12129174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 34105462 - 34105391
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagactcctgacaccaatcatttaggcacccctcaactc 206  Q
    ||||| ||||||||||||||||||||||||||| | ||||  || || ||||| | |||||||| |||||||    
T  34105462 ctcccgatctcgaatcaaaagtgatcggcccaccaaactctagaaacaaatcactaaggcacccttcaactc 34105391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 26216051 - 26216089
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  26216051 ctcccgatctcgaatcaaaagtgatcggcccaccagact 26216089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 26534751 - 26534789
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  26534751 ctcccaatctcgaatcaaaagtgatcggcccaccagact 26534789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 34092841 - 34092804
Alignment:
Q  138 cctatctcgaatcaaaagtgatcggcccactagactcc 175  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  34092841 cctatctcgaatcaaaagtgatcggctcaccagactcc 34092804  T

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Target: scaffold0068 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 35803 - 35841
Alignment:
Q  135 ctccctatctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  35803 ctcccgatctcgaatcaaaagtgatcggcccactagact 35841  T

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Target: scaffold0620 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 8175 - 8138
Alignment:
Q  138 cctatctcgaatcaaaagtgatcggcccactagactcc 175  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  8175 cctatctcgaatcaaaagtgatcggctcaccagactcc 8138  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 19426 - 19394
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||||||||||||||||||||||||| |||||    
T  19426 atctcgaatcaaaagtgatcggcccaccagact 19394  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 42176 - 42208
Alignment:
Q  141 atctcgaatcaaaagtgatcggcccactagact 173  Q
    ||||||||||||||||||||||||||| |||||    
T  42176 atctcgaatcaaaagtgatcggcccaccagact 42208  T

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