View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7823_low_24 (Length: 209)
Name: NF7823_low_24
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_low_24 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 38816443 - 38816651
Alignment:
| Q |
1 |
cctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcac |
100 |
Q |
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| T |
38816443 |
cctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcac |
38816542 |
T |
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| Q |
101 |
aaataaatatctcccataaatatctagcaccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacga |
200 |
Q |
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| T |
38816543 |
aaataaatatctcccataaatatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacga |
38816642 |
T |
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| Q |
201 |
atataacta |
209 |
Q |
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||||||||| |
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| T |
38816643 |
atataacta |
38816651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38821854 - 38821928
Alignment:
| Q |
1 |
cctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
75 |
Q |
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| T |
38821854 |
cctccttcttctttagatgggcacaccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
| Q |
146 |
aaggtgtgtccagtgtccaacagatgtcagtctccaaca |
184 |
Q |
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| T |
35665559 |
aaggtgtgtccagtgtccaacacatgtcagtttccaaca |
35665597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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