View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7823_low_25 (Length: 203)
Name: NF7823_low_25
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 55314982 - 55314798
Alignment:
| Q |
1 |
aaaaaaggaagcattaccctgttcgtgtgagaaagcactgcgagccattgatgtccaacacacggaactcgccaaagtatagcttgctcaaatcatcttt |
100 |
Q |
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| T |
55314982 |
aaaaaaggaagcattaccctgttcgtgtgagaaagcactgcgagccattgatgtccaacacacggaactccccaaagtatagcttgctcaaatcatcttt |
55314883 |
T |
|
| Q |
101 |
tgtcagatgttgaagaacaggggcagcaaggggaccctgcttccaaagacagtaagaaaaacttcattgatgtttgttacagtga |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
55314882 |
tgtcagatgttgaagaacaggggcagcaaggggaccctgcttccaaagacagtaagaaaaacttcattgatgttcgttacagtga |
55314798 |
T |
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