View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7823_low_3 (Length: 745)
Name: NF7823_low_3
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 14 - 733
Target Start/End: Complemental strand, 20550762 - 20550059
Alignment:
| Q |
14 |
cacatactccacaatttttgggccttccacaaggcgcatggtctcaaaatggtggatttgaaacagccggagaaggagttgttattgggttggttgacac |
113 |
Q |
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|||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20550762 |
cacatactccacaatttttgggtctgccacaaggagcatggtctcaaaatggtggatttgaaacagccggagaaggagttgttattgggttggttgacac |
20550663 |
T |
|
| Q |
114 |
cggcatagatccaacacaccctagttttagcgatagtaaatctgaaaatccgtatcctgttcctgctcatttttctggtatctgcgaggttactcgtgat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20550662 |
cggcatagatccaacacaccctagttttagcgatagtaaatctgaaaatccgtatcctgttcctgctcatttttctggtatctgcgaggttactcgtgat |
20550563 |
T |
|
| Q |
214 |
tttccatctggctcttgcaataggaaacttgttggggcacgacacttcgcagcatctgctataaccaggggaatttttaataggtctcaagtctatgctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
20550562 |
tttccatctggctcttgcaataggaaacttgttggggcacgacacttcgcagcatctgctataaccaggggaatttttaatatgtctcaagactatgctt |
20550463 |
T |
|
| Q |
314 |
ctccctttgatggctatggccatggcacgtgagtttttggcatttcaaaatcagtgttatgttttactctagtttatcatgattacttaatcggtttatt |
413 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
20550462 |
ctccctttgatggcgatggccatggcacgtgagtttttgtcatttcaaaatcagtgttatgttttactctaatttatcatgattacttaactggtttatt |
20550363 |
T |
|
| Q |
414 |
ctatcaaattccattcatcttctaatatcgttttgaagttttctctctactacttcaacatcagtgtgttatgtctagtttctatttgttgtagctttga |
513 |
Q |
| |
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| T |
20550362 |
ctatcaaattccattcatcttctaatatcgttttgaagttttctctcttctacttcaacatcagtgtgttatgtctagtttctatttgttgtagctttga |
20550263 |
T |
|
| Q |
514 |
gctctttaaggggttttcttcagttccttggacctttaacaannnnnnnggnnnnnnntaataatatttgagagttgttctggaattgcaatgcctcaga |
613 |
Q |
| |
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||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
20550262 |
gctctttaagg--------------ccttggacctttaacaatttttttgg-aaaaaataataatatttgagagttgttctggaattgcgatgcctcaga |
20550178 |
T |
|
| Q |
614 |
ttatcttaggcatcatttgaaaatgaaactgttgtcaaactttacgtttatttgattcacactaacaaacttagatttgttgaattttcatctcctttaa |
713 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |
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| T |
20550177 |
ttatcttaggcatcatttgaaaatgaaactattgtcaaactttacgtttatttgattcacaccaacaaacttagatttgttgaa-tttcttctcctttaa |
20550079 |
T |
|
| Q |
714 |
ctgaatgtccattttgatgt |
733 |
Q |
| |
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|||||||| ||||||||||| |
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| T |
20550078 |
ctgaatgttcattttgatgt |
20550059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 64 - 287
Target Start/End: Complemental strand, 37075579 - 37075356
Alignment:
| Q |
64 |
ggtggatttgaaacagccggagaaggagttgttattgggttggttgacaccggcatagatccaacacaccctagttttagcgatagtaaatctgaaaatc |
163 |
Q |
| |
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||||| |||||||| || ||||||||| | ||||| || |||||||| ||||| |||| ||||||||||||||| ||| |||||| ||| ||| |
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| T |
37075579 |
ggtgggtttgaaactgctggagaaggaatcactattgcatttgttgacactggcattgatcatacacaccctagttttgctgatgataaatccgaacatc |
37075480 |
T |
|
| Q |
164 |
cgtatcctgttcctgctcatttttctggtatctgcgaggttactcgtgattttccatctggctcttgcaataggaaacttgttggggcacgacacttcgc |
263 |
Q |
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| | || |||||||| |||||||| | ||| |||||||||| ||||||||||| || || ||||||||||| |||||||| || || || || || |
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| T |
37075479 |
cattcaatgctcctgctcggttttctggcacctgtgaggttactccggattttccatccggttcctgcaataggaagcttgttggagcccgtcattttgc |
37075380 |
T |
|
| Q |
264 |
agcatctgctataaccaggggaat |
287 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
37075379 |
agcatctgctataaccagaggaat |
37075356 |
T |
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Back To:
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