View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7823_low_8 (Length: 350)

Name: NF7823_low_8
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7823_low_8
NF7823_low_8
[»] chr2 (3 HSPs)
chr2 (66-217)||(14662328-14662476)
chr2 (66-216)||(45338572-45338715)
chr2 (66-216)||(45336260-45336403)
[»] chr3 (7 HSPs)
chr3 (66-219)||(48027288-48027438)
chr3 (66-219)||(48025108-48025258)
chr3 (66-217)||(48023999-48024147)
chr3 (66-219)||(48024548-48024698)
chr3 (66-216)||(28784514-28784657)
chr3 (141-216)||(5354612-5354686)
chr3 (141-216)||(48707695-48707769)
[»] chr7 (2 HSPs)
chr7 (66-214)||(13111118-13111263)
chr7 (66-199)||(13108840-13108970)
[»] chr6 (1 HSPs)
chr6 (66-128)||(6723461-6723523)
[»] chr5 (2 HSPs)
chr5 (66-216)||(32798007-32798150)
chr5 (66-216)||(32800319-32800462)
[»] chr8 (2 HSPs)
chr8 (66-216)||(44734153-44734296)
chr8 (66-128)||(44731842-44731904)
[»] chr1 (2 HSPs)
chr1 (67-128)||(9535257-9535318)
chr1 (66-216)||(1550157-1550300)
[»] chr4 (2 HSPs)
chr4 (66-217)||(7230963-7231108)
chr4 (66-216)||(22804610-22804755)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 14662328 - 14662476
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       | ||||||||||||||||||||||||||||    
T  14662328 taattaaagtgttgcttgtttatgtataagtgtcataattagatcgttgcttatttagtaagtaaaa---cagtccctaggtaatgatgtctattgttgc 14662424  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttc 217  Q
    ||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  14662425 taggtaataatgactagtgcttaagagtagatttcgtgcagatcttatgttc 14662476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 45338572 - 45338715
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||| |||||||||||||| || ||||||||||| |||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  45338572 taattaatgtgttgcttgtttaagtttaagtgtcatagttagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 45338665  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 216  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  45338666 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 45338715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 45336260 - 45336403
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||| ||||||||||| || || ||||||||||| |||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  45336260 taattaatgtgttgcttgtgtaagtttaagtgtcatatttagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 45336353  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 216  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  45336354 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 45336403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 48027438 - 48027288
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       | ||||||||||||||||||||||||||      
T  48027438 taatttaagtgttgcttgtttatgtataagtgtcataattagattgttgcttatttagtaagt---aaaacagtccctaggtaatgatgtctattgttct 48027342  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttcct 219  Q
    |||||||| |||||  |||||||||||||||||| ||| |||||||||||||||    
T  48027341 taggtaatgatgactagtgcttaagagtagatttagtgtagattttatgttcct 48027288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 48025258 - 48025108
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||       |  |||| || |||||||||||||||||      
T  48025258 taattaaagtgttgcttgtttatgtataaatgtcataattagattgttgcttatttagtaagt---aaaacaatcccaagttaatgatgtctattgttct 48025162  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttcct 219  Q
    |||||||| |||||  |||||||||||||||||| ||| |||||||||||||||    
T  48025161 taggtaatgatgactagtgcttaagagtagatttagtgtagattttatgttcct 48025108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 66 - 217
Target Start/End: Complemental strand, 48024147 - 48023999
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||       | ||||| ||||||||||||||| ||        
T  48024147 taattaaagtgttacttgtttatgtataagtgtcataattagattgttgcttatttagtaagt---aaaacagtcccaaggtaatgatgtctaatgaact 48024051  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttc 217  Q
    |||||||| |||||  |||||||||||||||||| |||||||||||||||||    
T  48024050 taggtaatgatgactagtgcttaagagtagatttagtgcagattttatgttc 48023999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 48024698 - 48024548
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||       | ||||| |||||||||||| |||||||      
T  48024698 taattaaaatgttgcatgtttatgtataagtgtcataattagattgttgcttatttagtaagt---aaaacagtcccaaggtaatgatgtttattgttct 48024602  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttcct 219  Q
    |||||||| |||||  |||||||| ||||||||| ||| |||||||||||||||    
T  48024601 taggtaatgatgactagtgcttaatagtagatttagtgtagattttatgttcct 48024548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 28784514 - 28784657
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||| |||||||||||||| || ||||||| ||| |||||| ||||||||||| ||||||         |||| ||||||||||||||||| |||      
T  28784514 taattaatgtgttgcttgtttaagtttaagtgttatagttagattgttgcttatttggtaagtaaga-----gtcc-taggtaatgatgtctatggttct 28784607  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 216  Q
    |||||||| |||||  ||| ||| |||||||||| ||||||||||||||||    
T  28784608 taggtaatgatgactagtgttta-gagtagatttagtgcagattttatgtt 28784657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 5354686 - 5354612
Alignment:
Q  141 cctaggtaatgatgtctattgttgctaggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 216  Q
    ||||||||||||||| ||| |||  ||||||||||||||  ||| ||| |||||||||| ||||||||||||||||    
T  5354686 cctaggtaatgatgtttatggttcttaggtaataatgactagtgttta-gagtagatttagtgcagattttatgtt 5354612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 48707769 - 48707695
Alignment:
Q  141 cctaggtaatgatgtctattgttgctaggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 216  Q
    ||||||||||||||||||| |||  |||||||| |||||  ||| |||| ||||||||| ||| ||||||||||||    
T  48707769 cctaggtaatgatgtctatggtttttaggtaatgatgactagtgtttaa-agtagatttagtgtagattttatgtt 48707695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 13111263 - 13111118
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||         ||||||||||||| ||||||||||||      
T  13111263 taattaaagtgttgcttgtttatgtagaagtgccataattagattgttgcttatttagtaagtaaaata---gtccctaggtaataatgtctattgttct 13111167  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatg 214  Q
    |||||||| |||||  |||||||||||||||||| ||||| ||||||||    
T  13111166 taggtaatgatgactagtgcttaagagtagatttagtgcaaattttatg 13111118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 13108970 - 13108840
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||       | ||||||||||||||||   |||||||      
T  13108970 taattaaagtgttgcttgtttatttataagtgtcataattagattgttgcttatttagtaagt---aaaacagtccctaggtaatgatacatattgttct 13108874  T
Q  166 taggtaataatgaccggtgcttaagagtagattt 199  Q
    | |||||| |||||  ||||||||||||||||||    
T  13108873 tgggtaatgatgactagtgcttaagagtagattt 13108840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 6723461 - 6723523
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 128  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  6723461 taattaaagtgttgcttgtttaagtgtaagtgtcataattagattgttgcttatttagtaagt 6723523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 32798007 - 32798150
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  32798007 taattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 32798100  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 216  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  32798101 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 32798150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 32800319 - 32800462
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  32800319 taattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 32800412  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 216  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  32800413 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 32800462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 44734153 - 44734296
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||| |||||||||||||| || ||||||||||| |||| | ||||||||||| ||||||         |||| ||||||||||||||||| |||      
T  44734153 taattaatgtgttgcttgtttaagtttaagtgtcatagttaggttgttgcttatttggtaagtaaga-----gtcc-taggtaatgatgtctatggttct 44734246  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 216  Q
    |||||||| |||||  ||| ||| |||||||||| ||||||||||||||||    
T  44734247 taggtaatgatgactagtgttta-gagtagatttagtgcagattttatgtt 44734296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 44731842 - 44731904
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 128  Q
    ||||||| |||||||||||||| || ||||||||||| |||||| ||||||||||| ||||||    
T  44731842 taattaatgtgttgcttgtttaagtttaagtgtcatagttagattgttgcttatttggtaagt 44731904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 9535257 - 9535318
Alignment:
Q  67 aattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 128  Q
    |||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||    
T  9535257 aattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagt 9535318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 1550157 - 1550300
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||| ||||||||||| || || ||||||||||| |||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  1550157 taattaatgtgttgcttgtataagtttaagtgtcatagttagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 1550250  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 216  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  1550251 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 1550300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 217
Target Start/End: Complemental strand, 7231108 - 7230963
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    |||||| | ||||||||||||| ||   |||||||||||||||| | ||||||||||||||||         |||| ||||||||||||||||| ||| |    
T  7231108 taattagattgttgcttgtttaagtt--agtgtcataattagattgctgcttatttagtaagtaaagta---gtccgtaggtaatgatgtctatggttcc 7231014  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttc 217  Q
    |||||||| |||||  ||| || |||| |||||| |||||||||||||||||    
T  7231013 taggtaatgatgactagtg-tttagagcagatttagtgcagattttatgttc 7230963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 22804610 - 22804755
Alignment:
Q  66 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 165  Q
    ||||||| | |||||||||||| || |||||| ||||||||||| | ||||||||| ||||||         |||| ||||||||||||||||| |||      
T  22804610 taattaatgcgttgcttgtttaagtttaagtgccataattagattgctgcttatttggtaagtaaaaga---gtcc-taggtaatgatgtctatggttct 22804705  T
Q  166 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 216  Q
    |||||||| |||||  ||| || |||||||||||  |||||||||||||||    
T  22804706 taggtaatgatgactagtg-tttagagtagatttaatgcagattttatgtt 22804755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University