View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7823_low_9 (Length: 347)
Name: NF7823_low_9
Description: NF7823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7823_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 25 - 333
Target Start/End: Complemental strand, 7714052 - 7713744
Alignment:
| Q |
25 |
tcttcctttcttccaactacttctccaaatcaaacgcaagtgatgacttcttctgcaacgccgacgacaaagccgccctcctcaaaatcagagaccattt |
124 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7714052 |
tcttcctttcttccatctacttctccaaatcaaacgcaagtgatgacttcttctgcaacgccgacgacaaagccgccctcctcaaaatcagagaccattt |
7713953 |
T |
|
| Q |
125 |
tggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgtgactggaacttcgtcggttgcggcagaccttatcctggccgagtcacc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7713952 |
tggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgtgactggaacttcgtaggttgcggcagaccttatcctggccgagtcacc |
7713853 |
T |
|
| Q |
225 |
gtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcagagtttggcgacctcccttatcttaacttcctctcattggctgaaatgccca |
324 |
Q |
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| T |
7713852 |
ggcgtcaccatcggccgtggctggggtctttccggtacacttccagcggagtttggcgacctcccttatcttagcatgctctcattggccgaaatgccga |
7713753 |
T |
|
| Q |
325 |
aagtaactg |
333 |
Q |
| |
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||||||||| |
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| T |
7713752 |
aagtaactg |
7713744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 7699715 - 7699399
Alignment:
| Q |
17 |
aacacttctcttcctttcttccaactacttctccaaatcaaacgcaagtgatgacttcttctgcaacgccgacgacaaagccgccctcctcaaaatcaga |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7699715 |
aacacttctcttcctttcttccatctacttctccaaatcaaacgcaagtgatgacttcttctgcaacgccgacgacaaagccgccctcctcaaaatcaga |
7699616 |
T |
|
| Q |
117 |
gaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgtgactggaacttcgtcggttgcggcagaccttatcctggcc |
216 |
Q |
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| T |
7699615 |
gaccatttcggtggtcccaaaggccgcctcgacgactgggacaacaacaccgaatgttgtgactggagcttcgtcggttgcggcagaccttatcctggcc |
7699516 |
T |
|
| Q |
217 |
gagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcagagtttggcgacctcccttatcttaacttcctctcattggctga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | | ||||||||||| || |
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| T |
7699515 |
gagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcggagtttggcaacctcccttatcttagcatgctctcattggccga |
7699416 |
T |
|
| Q |
317 |
aatgcccaaagtaactg |
333 |
Q |
| |
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|||||| |||||||||| |
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| T |
7699415 |
aatgccgaaagtaactg |
7699399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 7727583 - 7727263
Alignment:
| Q |
17 |
aacacttctcttcctttcttccaactacttctccaaatcaaacgcaagtgatg---acttcttctgcaacgccgacgacaaagccgccctcctcaaaatc |
113 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |||||| || ||||| | |||| |||||| ||| | ||||||||| | |||||||||||| |
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| T |
7727583 |
aacacttctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaatgccaatgacaaagccactctcctcaaaatc |
7727484 |
T |
|
| Q |
114 |
agagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgt---gactggaacttcgtcggttgcggcagaccttatc |
210 |
Q |
| |
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||||||||||| |||||||| |||||||| || ||| |||||||||| || || |||||| ||||||| ||||||||| || |||| ||| | |
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| T |
7727483 |
agagaccatttcggcggccccaacggccgcctctccgattgggacaacagtacagactgttgtagcgactggagcttcgtcgggtgtggcaaacccctac |
7727384 |
T |
|
| Q |
211 |
ctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcagagtttggcgacctcccttatcttaacttcctctcatt |
310 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7727383 |
ctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttctggtacgcttccagcagagtttggcgacctcccatatcttaacttcctctcatt |
7727284 |
T |
|
| Q |
311 |
ggctgaaatgcccaaagtaac |
331 |
Q |
| |
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||||||||||||||||||||| |
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| T |
7727283 |
ggctgaaatgcccaaagtaac |
7727263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 7731742 - 7731421
Alignment:
| Q |
18 |
acacttctcttcctttcttccaactacttctccaaatcaaacgcaagtgatg---acttcttctgcaacgccgacgacaaagccgccctcctcaaaatca |
114 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| |||||| || ||||| | |||| |||||||||| | ||||||||| ||||||||||||||| |
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| T |
7731742 |
acactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctcctcaaaatca |
7731643 |
T |
|
| Q |
115 |
gagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgt---gactggaacttcgtcggttgcggcagaccttatcc |
211 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||| ||| ||||||||| || || |||||| ||||||| ||||||||| || || | ||| || |
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| T |
7731642 |
gagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggtaaacccctacc |
7731543 |
T |
|
| Q |
212 |
tggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcagagtttggcgacctcccttatcttaacttcctctcattg |
311 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7731542 |
tggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagtagagtttggcgacctcccttatcttaacttcctctcatta |
7731443 |
T |
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| Q |
312 |
gctgaaatgcccaaagtaactg |
333 |
Q |
| |
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|| |||||||| |||||||||| |
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| T |
7731442 |
gccgaaatgccgaaagtaactg |
7731421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 7739900 - 7739579
Alignment:
| Q |
18 |
acacttctcttcctttcttccaactacttctccaaatcaaacgcaagtgatg---acttcttctgcaacgccgacgacaaagccgccctcctcaaaatca |
114 |
Q |
| |
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||||| |||||||||||||||| ||||||||||| |||||| || ||||| | |||| |||||||||| | ||||||||| ||||||||||||||| |
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| T |
7739900 |
acactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctcctcaaaatca |
7739801 |
T |
|
| Q |
115 |
gagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgt---gactggaacttcgtcggttgcggcagaccttatcc |
211 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||| ||| ||||||||| || || |||||| ||||||| ||||||||| || || | ||| || |
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| T |
7739800 |
gagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggtaaacccctacc |
7739701 |
T |
|
| Q |
212 |
tggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcagagtttggcgacctcccttatcttaacttcctctcattg |
311 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||| |
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| T |
7739700 |
tggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattg |
7739601 |
T |
|
| Q |
312 |
gctgaaatgcccaaagtaactg |
333 |
Q |
| |
|
|| ||||||||||||||||||| |
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| T |
7739600 |
gccgaaatgcccaaagtaactg |
7739579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 12907817 - 12907863
Alignment:
| Q |
93 |
aaagccgccctcctcaaaatcagagaccattttggcggccctaacgg |
139 |
Q |
| |
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||||| || ||||||||||| ||||||||||| |||||||||||||| |
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| T |
12907817 |
aaagctgctctcctcaaaataagagaccatttcggcggccctaacgg |
12907863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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