View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7824_high_1 (Length: 984)

Name: NF7824_high_1
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7824_high_1
NF7824_high_1
[»] chr7 (6 HSPs)
chr7 (220-965)||(5178823-5179566)
chr7 (692-745)||(22845041-22845094)
chr7 (692-740)||(42233252-42233300)
chr7 (902-965)||(8306762-8306825)
chr7 (692-741)||(21068983-21069032)
chr7 (902-965)||(8551768-8551831)
[»] chr8 (14 HSPs)
chr8 (388-965)||(5185131-5185710)
chr8 (409-965)||(6231641-6232201)
chr8 (388-965)||(1795305-1795878)
chr8 (788-965)||(5177689-5177860)
chr8 (770-965)||(5198773-5198961)
chr8 (776-965)||(5195125-5195308)
chr8 (391-579)||(5179352-5179537)
chr8 (781-965)||(5207123-5207299)
chr8 (416-536)||(5056638-5056757)
chr8 (388-466)||(29798225-29798299)
chr8 (880-965)||(5171591-5171676)
chr8 (692-741)||(21112654-21112703)
chr8 (776-814)||(33861527-33861565)
chr8 (645-690)||(5058903-5058948)
[»] chr2 (10 HSPs)
chr2 (692-743)||(27510633-27510684)
chr2 (692-741)||(27193733-27193782)
chr2 (692-741)||(27843547-27843596)
chr2 (692-739)||(3643125-3643172)
chr2 (692-740)||(35610915-35610963)
chr2 (776-814)||(27194264-27194302)
chr2 (776-814)||(27844078-27844116)
chr2 (776-814)||(35611435-35611473)
chr2 (776-814)||(39441471-39441509)
chr2 (700-741)||(24267988-24268029)
[»] chr5 (8 HSPs)
chr5 (692-745)||(3691231-3691284)
chr5 (692-745)||(3875503-3875556)
chr5 (692-745)||(17870566-17870619)
chr5 (692-741)||(10026238-10026287)
chr5 (692-741)||(25541703-25541752)
chr5 (776-814)||(14191202-14191240)
chr5 (700-741)||(24628878-24628919)
chr5 (700-741)||(30345561-30345602)
[»] scaffold0356 (3 HSPs)
scaffold0356 (692-743)||(15958-16009)
scaffold0356 (692-743)||(16877-16928)
scaffold0356 (776-815)||(15437-15476)
[»] scaffold0003 (1 HSPs)
scaffold0003 (692-743)||(184068-184119)
[»] chr6 (8 HSPs)
chr6 (692-743)||(18857795-18857846)
chr6 (887-965)||(1187201-1187279)
chr6 (692-745)||(30882563-30882616)
chr6 (914-965)||(1192907-1192958)
chr6 (914-965)||(896786-896837)
chr6 (914-965)||(1181979-1182030)
chr6 (896-965)||(1197434-1197503)
chr6 (692-741)||(15334557-15334606)
[»] chr4 (4 HSPs)
chr4 (692-743)||(14146459-14146510)
chr4 (914-965)||(10203381-10203432)
chr4 (692-741)||(55558033-55558082)
chr4 (776-814)||(31921507-31921545)
[»] chr3 (6 HSPs)
chr3 (692-743)||(11369898-11369949)
chr3 (692-741)||(10001668-10001717)
chr3 (692-741)||(27275656-27275705)
chr3 (692-741)||(10111860-10111909)
chr3 (692-741)||(10245545-10245594)
chr3 (776-814)||(41763509-41763547)
[»] chr1 (4 HSPs)
chr1 (692-743)||(2330426-2330477)
chr1 (692-743)||(48774293-48774344)
chr1 (692-745)||(36208474-36208527)
chr1 (700-741)||(52501831-52501872)
[»] scaffold1139 (1 HSPs)
scaffold1139 (692-743)||(2274-2325)
[»] scaffold0262 (1 HSPs)
scaffold0262 (692-741)||(20264-20313)
[»] scaffold0225 (1 HSPs)
scaffold0225 (692-741)||(13204-13253)
[»] scaffold0118 (2 HSPs)
scaffold0118 (692-741)||(27629-27678)
scaffold0118 (692-741)||(24437-24486)
[»] scaffold0029 (1 HSPs)
scaffold0029 (692-741)||(141174-141222)
[»] scaffold0002 (1 HSPs)
scaffold0002 (692-741)||(318641-318689)
[»] scaffold0017 (1 HSPs)
scaffold0017 (692-740)||(187804-187852)


Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 220 - 965
Target Start/End: Complemental strand, 5179566 - 5178823
Alignment:
Q  220 ttaattag-accatacttttgaaaaggaaaacataattagacgttcattaattagtaccttgttagttaattgggttagnnnnnnnnnnnnntccgtcca 318  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||    
T  5179566 ttaattagtaccatacttttgaaaaggaaaacataattagacgttcattaattagtaccttgttagttaattgggttagaaaaaaaaaa---tccgtcca 5179470  T
Q  319 tccatctaacttgataagattcattatactgtattgtccaccatacttttgtatgaaactattgtaccgtcggttaaagatacgaattttaaatcaatga 418  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179469 tccatctaacttgataagattcattatagtgtattgtccaccatacttttgtatgaaactattgtaccgtcggttaaagatacgaattttaaatcaatga 5179370  T
Q  419 aggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacgaagatcatgcagcttttgtagaaaaaa-tca 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5179369 aggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacgaagatcatgcagcttttgtagaaaaaaatca 5179270  T
Q  518 acttaaagggatcattgcatggagaagttggaaatgagttatatccaaaaatgttatggtgaaatggaaatcagcaagaaggtccttgtttggaagatgc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||||| |||||||||||||||||||||||    
T  5179269 acttaaagggatcattgcatggagaagttggaaatgagttatatccaaaaatgttctgacaaaatggaaatcagca-gaaggtccttgtttggaagatgc 5179171  T
Q  618 gaaatgtgaatcataataactagttatcaatcattggaagataataaagaacgactaataagtaaagccaataataaagaacaaactaagagttactaac 717  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179170 gaaatgtgaatcataataagtagttatcaatcattggaagataataaagaacgactaataagtaaagccaataataaagaacaaactaagagttactaac 5179071  T
Q  718 tctacgatactattcagcattttccatagtgtatcaaaacaaatgcggcatcatgcatttaagaggtaacatcaaacttcgaagtaaaaacatgtctatg 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179070 tctacgatactattcagcattttccatagtgtatcaaaacaaatgtggcatcatgcatttaagaggtaacatcaaacttcgaagtaaaaacatgtctatg 5178971  T
Q  818 agtttatgacagcgtcaacaacattaaaattctaacataaagctaaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcat 917  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178970 agtttatgacagcgtcaacaacattaaaattctaacataaagctaaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcat 5178871  T
Q  918 caatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178870 caatcttcattgagcttatgactttcacattcttcaagccatgccacc 5178823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 692 - 745
Target Start/End: Complemental strand, 22845094 - 22845041
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 745  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  22845094 taaagaacaaactaagagttactaactctacgacaccattcaacattttccata 22845041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 692 - 740
Target Start/End: Complemental strand, 42233300 - 42233252
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcatttt 740  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  42233300 taaagaaaaaactaagagttactaactctacgataccattcaacatttt 42233252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 902 - 965
Target Start/End: Complemental strand, 8306825 - 8306762
Alignment:
Q  902 aaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    ||||||| ||| |||||||| |||||||||| | ||||||||| || |||||||||||||||||    
T  8306825 aaatcaacattctcatcaattttcattgagcgtgtgactttcaaatccttcaagccatgccacc 8306762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 741
Target Start/End: Original strand, 21068983 - 21069032
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||||||||||||||||||||||  ||||| |||||||    
T  21068983 taaagaaaaaactaagagttactaactctacgatatcattcaacattttc 21069032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 902 - 965
Target Start/End: Original strand, 8551768 - 8551831
Alignment:
Q  902 aaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    ||||||| ||| |||||||| |||||||||  |  |||||||| ||||||||||||||||||||    
T  8551768 aaatcaacattctcatcaattttcattgagtgtgcgactttcaaattcttcaagccatgccacc 8551831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 388 - 965
Target Start/End: Complemental strand, 5185710 - 5185131
Alignment:
Q  388 tcggttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacg 487  Q
    |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||    
T  5185710 tcggttaaagatacaaattttaaatcaatgaaggaagaaactaaaaatatttcagtagacagcttgaaaacattgcaaggtagcaatgcccattgatacg 5185611  T
Q  488 aagatcatgcagcttttgtagaaaaaatcaacttaaagggatcattgcatggagaagttggaaatgagttatatccaaaaatgttatggtgaaatggaaa 587  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5185610 aagatcatgcagcttttgtagaaaaaatcaacttaaagggatcactgcattgagaagttggaaatgagttatatccaaaaatgttatggtaaaatggaaa 5185511  T
Q  588 tcagcaagaaggtccttgtttggaagatgcgaaatgtgaatcataataactagttatcaatcattggaagataataaagaacgactaataagtaaagcca 687  Q
    |||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  5185510 tcagcaagaaggtccttgcttggaagatgcaaaatgcgaatcacaataactagttatcaatcattggaagataataaagaactacaaataagtaaagcca 5185411  T
Q  688 ataataaagaacaaactaagagttactaactctacgatactattcagcattttccatagtg--tatcaaaacaaatgcggcatcatgcatttaagaggta 785  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||| | |||  |||||||||||||||    
T  5185410 ataataaagaacaaactaagagttactaactctacgataccgttcagcattttccatagtgtatatcaaaacaaatgtgtcattgtgcatttaagaggta 5185311  T
Q  786 acatcaaacttcgaagtaaaaacatgtctatgagtttatgacagcgtcaacaacattaaaattctaacataaagctaaatttttctccaattggcaacaa 885  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||| ||| ||||||||||| ||||||| |||||||| || |||| |||||||||||||    
T  5185310 acatcaaactttgaagtaaaaacatgtcactgagtttatgacagcatcagcaacattaaaactctaacacaaagctaatttcttcttcaattggcaacaa 5185211  T
Q  886 ttctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5185210 ttctagcatggtcttgaagtcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 5185131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 409 - 965
Target Start/End: Complemental strand, 6232201 - 6231641
Alignment:
Q  409 aaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacgaagatcatgcagcttttgtag 508  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||    
T  6232201 aaatcaatgaaggaagaaactaaaaatatttcagtagacagcttgaaaacattgcaaggtagcaatgcccattgatacaaagatcatgcagcttttgtag 6232102  T
Q  509 aaaaaatcaacttaaagggatcattgcatggagaagttggaaatgagttatatccaaaaatgttatggtgaaatggaaatcagcaagaaggtccttgttt 608  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  6232101 aaaaaatcaacttgaagggatcactgcatggagaagttggaaatgagttatatccaaaaatgttatggtgaaatggaaatcagca-gaaggtccttgctt 6232003  T
Q  609 ggaagatgcgaaatgtgaatcataataactagttatcaatcattggaagataataaagaacgactaataagtaaagccaataataaagaacaaacta--a 706  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||  |    
T  6232002 ggaagatgcgaaatgcgaatcacaataactagttatcaatcattggaagataataaataactacaaataagtaaagccaataataaagaacaaactataa 6231903  T
Q  707 gagttactaactctacgatactattcagcattttccatagtgt---atcaaaacaaatgcggcatcatgcatttaagaggtaacatcaaacttcgaagta 803  Q
    ||| |||||||||||||||||   |||| ||||||||||||||   |||| |||||||| | ||||||||||||||||||||| |||||||||| |||||    
T  6231902 gagctactaactctacgataccgctcagaattttccatagtgttatatcataacaaatgtgtcatcatgcatttaagaggtaatatcaaacttcaaagta 6231803  T
Q  804 aaaacatgtctatgagtttatgacagcgtcaacaacattaaaattctaacataaagctaaatttttctccaattggcaacaattctagaatggtcttgaa 903  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |||||||||||    
T  6231802 aaaacatgtctatgagtttatgacagcgtcagcaacattaaaattctaacataaagctaatttttcctccatttggcaacaattctagcatggtcttgaa 6231703  T
Q  904 atcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    ||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  6231702 atcaatattcttatcattcttcaatgagcttatgactttcacattcttcaagccatgccacc 6231641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 388 - 965
Target Start/End: Original strand, 1795305 - 1795878
Alignment:
Q  388 tcggttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacg 487  Q
    ||||| |||||||||||||| | ||||||||||| ||||||||    |  ||||  |||||||||||||||||| ||||| |||||| ||| |||| | |    
T  1795305 tcggtcaaagatacgaattt-acatcaatgaaggtagaaaatac---ttgttcaaaagacagcttgaaaacattacaaggcagtaatccccgtagacatg 1795400  T
Q  488 aagatcatgcagcttttgtagaaaaaatcaacttaaagggatcattgcatggagaagttggaaatgagttatatccaaaaatgttatggtgaaatggaaa 587  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||   |  ||  || |||||||||||||||||||||||||||||||||||||    
T  1795401 aaggtcatgcagtttttgtagaaaaaatcaacttaaagggatcattgcatcatg--gt--gagatgagttatatccaaaaatgttatggtgaaatggaaa 1795496  T
Q  588 tcagcaagaaggtccttgtttggaagatgcgaaatgtgaatcataataactagttatcaatcattggaagataataaagaacgactaataagtaaagcca 687  Q
    |||||| ||||||||||| |||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  1795497 tcagca-gaaggtccttgcttggaagaagcgaaatgcgaatcacattaactagttatcaatcattggaagataataaagaactacaaataagtaaagcca 1795595  T
Q  688 ataataaagaacaaactaagagttactaactctacgatactattcagcattttccatagtg--tatcaaaacaaatgcggcatcatgcatttaagaggta 785  Q
    |||||||||||||||||||||||||||| |||||||||||  |||| |||||||| |||||  |||||||| ||| | | ||||||||||||||||||||    
T  1795596 ataataaagaacaaactaagagttactatctctacgataccgttcatcattttccgtagtgtatatcaaaagaaaggtgtcatcatgcatttaagaggta 1795695  T
Q  786 acatcaaacttcgaagtaaaaacatgtctatgagtttatgacagcgtcaacaacattaaaattctaacataaagct---aaatttttctccaattggcaa 882  Q
    |||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||   |||   ||||||| |||||||    
T  1795696 acatcaaacttcaaagaaaaaacatgtctatgagtttatggcagcgtcagcaacattaaaattctaacataaagctaaaaaaaaattctccatttggcaa 1795795  T
Q  883 caattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    ||||||||| |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  1795796 caattctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccacc 1795878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 788 - 965
Target Start/End: Complemental strand, 5177860 - 5177689
Alignment:
Q  788 atcaaacttcgaagtaaaaacatgtctatgagtttatgacagcgtcaacaacattaaaattctaacataaagctaaatttttctccaattggcaacaatt 887  Q
    |||||||||| || |||||||| ||||||||| ||||||||||      |||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  5177860 atcaaacttcaaaataaaaacacgtctatgagattatgacagc------aacattaaaattctaacataaaactaattttttctccaattggcaacaatt 5177767  T
Q  888 ctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5177766 ctagcatggtcttgaagtcaatattatcatcaatcttcactgagcttatgactttcacattcttcaagccatgccacc 5177689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 770 - 965
Target Start/End: Original strand, 5198773 - 5198961
Alignment:
Q  770 atgcatttaagaggtaacatcaaacttcgaagtaaaaacatgtctatgagtttatgacagcgtcaacaacattaaaattctaacataaagctaaattttt 869  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||||      ||||||||||||||||||||||| ||| |||||    
T  5198773 atgcattta-gaggtaaaatcaaacttcaaagtaaaaacatgtctatgagttgatgacagc------aacattaaaattctaacataaagttaatttttt 5198865  T
Q  870 ctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    |  || ||||||||| |||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  5198866 catcagttggcaacagttctagcatggtcttgaaatcaatattatcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccacc 5198961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 776 - 965
Target Start/End: Complemental strand, 5195308 - 5195125
Alignment:
Q  776 ttaagaggtaacatcaaacttcgaagtaaaaacatgtctatgagtttatgacagcgtcaacaacattaaaattctaacataaagctaaatttttctccaa 875  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||| ||||||||      ||||||||||||||||||||||| ||| ||||||  ||     
T  5195308 ttaagaggtaaaatcaaacttcaacgtaaaaacatgtctatgagttgatgacagc------aacattaaaattctaacataaagttaattttttcatcag 5195215  T
Q  876 ttggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  5195214 ttggcaacagttctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccacc 5195125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 391 - 579
Target Start/End: Complemental strand, 5179537 - 5179352
Alignment:
Q  391 gttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacgaag 490  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||||  | |  |||   |||     
T  5179537 gttaaagatacgtattttaaataaatgaaggaagaaaataaaaatatttcagaagacagcttgaaaatattgcaaggcagtaa--cactcagacttgaaa 5179440  T
Q  491 atcatgcagcttttgtagaaaaaatcaacttaaagggatcattgcatggagaagttggaaatgagttatatccaaaaatgttatggtga 579  Q
    ||| ||||||||||||||| ||||||||||| ||||||||||| ||  |||||| ||||||||||| || ||| |||||||||||||||    
T  5179439 atcttgcagcttttgtagacaaaatcaactt-aagggatcattacactgagaagctggaaatgagtgatgtccgaaaatgttatggtga 5179352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 781 - 965
Target Start/End: Complemental strand, 5207299 - 5207123
Alignment:
Q  781 aggtaacatcaaacttcgaagtaaaaacatgtctatgagtttatgacagcgtcaacaacattaaaattctaacataaagctaaatttttctccaattggc 880  Q
    |||||||||||||||| ||||||||  ||||||||| |||| |||| |      ||||| ||||| ||||||  ||||||||| || |||||||| |  |    
T  5207299 aggtaacatcaaacttggaagtaaa--catgtctatcagttgatgaaa------acaaccttaaacttctaaggtaaagctaatttcttctccaaatccc 5207208  T
Q  881 aacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    ||||||||||  |||||||||||||||| ||| |||||||||||||| |||||  ||||||| |||| |||||||||||||||||    
T  5207207 aacaattctaacatggtcttgaaatcaacattctcatcaatcttcatagagctcgtgacttttacatccttcaagccatgccacc 5207123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 416 - 536
Target Start/End: Original strand, 5056638 - 5056757
Alignment:
Q  416 tgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaattcccatagatacgaagatcatgcagcttttgtagaaaaaat 515  Q
    ||||||||||||||| | ||||||||||||| |||||||||||||| |||||||| |||   |||||||| |||||||||| ||||||||  || |||||    
T  5056638 tgaaggaagaaaatagaaatatttcagtagatagcttgaaaacattacaaggtagcaatggtcatagatatgaagatcatgtagcttttgcggacaaaat 5056737  T
Q  516 caacttaaagggatcattgca 536  Q
    ||| || ||||||||| ||||    
T  5056738 caa-tttaagggatcactgca 5056757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 388 - 466
Target Start/End: Complemental strand, 29798299 - 29798225
Alignment:
Q  388 tcggttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaag 466  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||    ||||||||||||||||    
T  29798299 tcggttgaagatactaattttaaatcaatgaagcaagaaaataaaaatatttcagtaga----ttgaaaacattgcaag 29798225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 880 - 965
Target Start/End: Complemental strand, 5171676 - 5171591
Alignment:
Q  880 caacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    |||| |||||| || || ||| ||||||| ||| || ||||||||||| |||||| | |||||||||| |||||||||||||||||    
T  5171676 caaccattctaaaaaggacttcaaatcaacattctcgtcaatcttcatagagcttgtaactttcacatccttcaagccatgccacc 5171591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 741
Target Start/End: Original strand, 21112654 - 21112703
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||||||||||||||||| ||||| ||||| |||||||    
T  21112654 taaagaaaaaactaagagttactaactctatgataccattcaacattttc 21112703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 814
Target Start/End: Original strand, 33861527 - 33861565
Alignment:
Q  776 ttaagaggtaacatcaaacttcgaagtaaaaacatgtct 814  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  33861527 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 33861565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 645 - 690
Target Start/End: Original strand, 5058903 - 5058948
Alignment:
Q  645 caatcattggaagataataaagaacgactaataagtaaagccaata 690  Q
    ||||||||||||||||||||||||| || |||||||| ||| ||||    
T  5058903 caatcattggaagataataaagaactacaaataagtatagctaata 5058948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 692 - 743
Target Start/End: Complemental strand, 27510684 - 27510633
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 743  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27510684 taaagaacaaactaagagttactaactctacgataccattcagcattttcca 27510633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 27193782 - 27193733
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27193782 taaagaacaaactaagagttactaactctacgataccattcagcattttc 27193733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 27843596 - 27843547
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27843596 taaagaacaaactaagagttactaactctacgataccattcagcattttc 27843547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 692 - 739
Target Start/End: Complemental strand, 3643172 - 3643125
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattt 739  Q
    ||||| ||||||||||||||||||||||||||| || |||||||||||    
T  3643172 taaaggacaaactaagagttactaactctacgacaccattcagcattt 3643125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 692 - 740
Target Start/End: Complemental strand, 35610963 - 35610915
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcatttt 740  Q
    |||| |||||||||||||||||||||| |||||||  ||||||||||||    
T  35610963 taaaaaacaaactaagagttactaactgtacgatagcattcagcatttt 35610915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 814
Target Start/End: Complemental strand, 27194302 - 27194264
Alignment:
Q  776 ttaagaggtaacatcaaacttcgaagtaaaaacatgtct 814  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  27194302 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 27194264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 814
Target Start/End: Complemental strand, 27844116 - 27844078
Alignment:
Q  776 ttaagaggtaacatcaaacttcgaagtaaaaacatgtct 814  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  27844116 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 27844078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 814
Target Start/End: Complemental strand, 35611473 - 35611435
Alignment:
Q  776 ttaagaggtaacatcaaacttcgaagtaaaaacatgtct 814  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  35611473 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 35611435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 814
Target Start/End: Original strand, 39441471 - 39441509
Alignment:
Q  776 ttaagaggtaacatcaaacttcgaagtaaaaacatgtct 814  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  39441471 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 39441509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 741
Target Start/End: Original strand, 24267988 - 24268029
Alignment:
Q  700 aaactaagagttactaactctacgatactattcagcattttc 741  Q
    |||||||||||||||||||||| ||||| ||||| |||||||    
T  24267988 aaactaagagttactaactctatgataccattcaacattttc 24268029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 692 - 745
Target Start/End: Complemental strand, 3691284 - 3691231
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 745  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  3691284 taaagaacaaactaagagttactaactctacgataccattcaacattttccata 3691231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 692 - 745
Target Start/End: Original strand, 3875503 - 3875556
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 745  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  3875503 taaagaacaaactaagagttactaactctacgataccattcaacattttccata 3875556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 692 - 745
Target Start/End: Original strand, 17870566 - 17870619
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 745  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  17870566 taaagaacaaactaagagttactaactctacgacaccattcaacattttccata 17870619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 10026287 - 10026238
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  10026287 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 10026238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 741
Target Start/End: Original strand, 25541703 - 25541752
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  25541703 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 25541752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 776 - 814
Target Start/End: Original strand, 14191202 - 14191240
Alignment:
Q  776 ttaagaggtaacatcaaacttcgaagtaaaaacatgtct 814  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  14191202 ttaagaggtaacataaaacttcgaagtaaaaacatgtct 14191240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 741
Target Start/End: Original strand, 24628878 - 24628919
Alignment:
Q  700 aaactaagagttactaactctacgatactattcagcattttc 741  Q
    |||| ||||||||||||||||||||||| ||||| |||||||    
T  24628878 aaaccaagagttactaactctacgataccattcaacattttc 24628919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 741
Target Start/End: Original strand, 30345561 - 30345602
Alignment:
Q  700 aaactaagagttactaactctacgatactattcagcattttc 741  Q
    |||||||||||||||||||| ||||||| ||||| |||||||    
T  30345561 aaactaagagttactaactcaacgataccattcaacattttc 30345602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 692 - 743
Target Start/End: Original strand, 15958 - 16009
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 743  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  15958 taaagaacaaactaagagttactaactctacgataccattaagcattttcca 16009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 692 - 743
Target Start/End: Original strand, 16877 - 16928
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 743  Q
    ||||| ||||||||||||||||||||||||||| || |||||||||||||||    
T  16877 taaaggacaaactaagagttactaactctacgacaccattcagcattttcca 16928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 815
Target Start/End: Original strand, 15437 - 15476
Alignment:
Q  776 ttaagaggtaacatcaaacttcgaagtaaaaacatgtcta 815  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  15437 ttaagaggtaacataaaacttcaaagtaaaaacatgtcta 15476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 692 - 743
Target Start/End: Complemental strand, 184119 - 184068
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 743  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  184119 taaagaacaaactaagagttactaactctacgataccattcaacattttcca 184068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 692 - 743
Target Start/End: Complemental strand, 18857846 - 18857795
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 743  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  18857846 taaagaacaaactaagagttactaactctacgataccattcaacattttcca 18857795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 887 - 965
Target Start/End: Complemental strand, 1187279 - 1187201
Alignment:
Q  887 tctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    |||| ||||||||| |||  || ||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  1187279 tctaaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccacc 1187201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 692 - 745
Target Start/End: Complemental strand, 30882616 - 30882563
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 745  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  30882616 taaagaacaaactaagagttactaactctacgacaccattcaacattttccata 30882563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 914 - 965
Target Start/End: Complemental strand, 1192958 - 1192907
Alignment:
Q  914 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  1192958 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccacc 1192907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 914 - 965
Target Start/End: Complemental strand, 896837 - 896786
Alignment:
Q  914 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    |||||||||| | | ||||||||||||||||||| |||||||||||||||||    
T  896837 tcatcaatctccttagagcttatgactttcacatccttcaagccatgccacc 896786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 914 - 965
Target Start/End: Complemental strand, 1182030 - 1181979
Alignment:
Q  914 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    |||||||||||| | ||||||||||||||||||| ||||||| |||||||||    
T  1182030 tcatcaatcttcttagagcttatgactttcacatccttcaagtcatgccacc 1181979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 896 - 965
Target Start/End: Complemental strand, 1197503 - 1197434
Alignment:
Q  896 gtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    ||||| ||||||| ||| ||||| |||||||| | |||  |||||||||||| ||||||| |||||||||    
T  1197503 gtcttaaaatcaacattctcatcgatcttcatagtgctcgtgactttcacatccttcaagtcatgccacc 1197434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 15334606 - 15334557
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||| |||||||    
T  15334606 taaagaaaaaactaagggttactaactctatgataccattcaacattttc 15334557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 692 - 743
Target Start/End: Original strand, 14146459 - 14146510
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 743  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  14146459 taaagaacaaactaagagttactaactctccgataccattcagcattttcca 14146510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 914 - 965
Target Start/End: Complemental strand, 10203432 - 10203381
Alignment:
Q  914 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccacc 965  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  10203432 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccacc 10203381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 741
Target Start/End: Original strand, 55558033 - 55558082
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  55558033 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 55558082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 814
Target Start/End: Complemental strand, 31921545 - 31921507
Alignment:
Q  776 ttaagaggtaacatcaaacttcgaagtaaaaacatgtct 814  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  31921545 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 31921507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 692 - 743
Target Start/End: Complemental strand, 11369949 - 11369898
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 743  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  11369949 taaagaacaaactaagagttactaactccacgataccattcagcattttcca 11369898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 10001717 - 10001668
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  10001717 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 10001668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 27275705 - 27275656
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  27275705 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 27275656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 10111909 - 10111860
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| ||||||||||||| |||||||||||||| ||||| |||||||    
T  10111909 taaagaaaaaactaagagttaataactctacgataccattcaacattttc 10111860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 10245594 - 10245545
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| ||||||||||||||||| |||||||||| ||||| |||||||    
T  10245594 taaagaaaaaactaagagttactaaatctacgataccattcaacattttc 10245545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 814
Target Start/End: Original strand, 41763509 - 41763547
Alignment:
Q  776 ttaagaggtaacatcaaacttcgaagtaaaaacatgtct 814  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  41763509 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 41763547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 692 - 743
Target Start/End: Complemental strand, 2330477 - 2330426
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 743  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  2330477 taaagaacaaactaagagttactaactctacgataccattcaacattttcca 2330426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 692 - 743
Target Start/End: Original strand, 48774293 - 48774344
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 743  Q
    |||||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  48774293 taaagaacaaactaagagttactaactctacgataccattaaacattttcca 48774344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 745
Target Start/End: Complemental strand, 36208527 - 36208474
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttccata 745  Q
    |||||||||||||||||||||||||||||| |||||  ||||| ||||| ||||    
T  36208527 taaagaacaaactaagagttactaactctatgataccgttcagaatttttcata 36208474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 741
Target Start/End: Complemental strand, 52501872 - 52501831
Alignment:
Q  700 aaactaagagttactaactctacgatactattcagcattttc 741  Q
    |||| ||||||||||||||||||||||| ||||| |||||||    
T  52501872 aaaccaagagttactaactctacgataccattcaacattttc 52501831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 692 - 743
Target Start/End: Complemental strand, 2325 - 2274
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttcca 743  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  2325 taaagaacaaactaagagttactaactctacgatatcattcaacattttcca 2274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 20313 - 20264
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  20313 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 20264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 741
Target Start/End: Original strand, 13204 - 13253
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  13204 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 13253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 741
Target Start/End: Original strand, 27629 - 27678
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  27629 taaagaaaaaactaagagttactaactctacgataccattcaacattttc 27678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 741
Target Start/End: Original strand, 24437 - 24486
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    ||||||| ||||||||||||||||||||||| |||| ||||| |||||||    
T  24437 taaagaaaaaactaagagttactaactctacaataccattcaacattttc 24486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 741
Target Start/End: Original strand, 141174 - 141222
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    |||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  141174 taaagaacaa-ctaagagttactaactctacgataccattcaacattttc 141222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 741
Target Start/End: Original strand, 318641 - 318689
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcattttc 741  Q
    |||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  318641 taaagaacaa-ctaagagttactaactctacgataccattcaacattttc 318689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 692 - 740
Target Start/End: Complemental strand, 187852 - 187804
Alignment:
Q  692 taaagaacaaactaagagttactaactctacgatactattcagcatttt 740  Q
    ||||||| |||||||||||| ||||||||||||||| ||||| ||||||    
T  187852 taaagaaaaaactaagagttgctaactctacgataccattcaacatttt 187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University