View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_high_10 (Length: 469)
Name: NF7824_high_10
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 115 - 439
Target Start/End: Original strand, 11026998 - 11027320
Alignment:
| Q |
115 |
tcaatcaaattgacattagaatagcaccaaattaagtaaatgctaaagtggaggagcttatcatatagatcttggggnnnnnnnnactcatagatgttaa |
214 |
Q |
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| T |
11026998 |
tcaatcaaattgacattagaatagcaccaaattaagtaaatgctaaagtggaggagcttatcatatagatcttggggttttttt-actcatagattttaa |
11027096 |
T |
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| Q |
215 |
gttaattttcttgatgttgacattttgtactgcaaaggtttacccattttaaannnnnnnaaacagatgaacagccacagatcaccatcttacaccttcc |
314 |
Q |
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| T |
11027097 |
gttaattttcttgatgttgacattttgtactgcaaaggtttacc-attttaattttttttaaacaggtgaacagccacagatcaccagcttacaccttcc |
11027195 |
T |
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| Q |
315 |
aacttcacaatccaaaatatacaaatggaacctaattttgtcacaccatatactgttccaacaattcattaaaattatatcacatttcaaaacacttaaa |
414 |
Q |
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| T |
11027196 |
aacttcacaatccaaaatatacaaatggaaccaaattttgtaacaccatatactgttccaacaattcattataattatatcacatatcaaaacacttaaa |
11027295 |
T |
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| Q |
415 |
ttatactatagcttctctccatgtg |
439 |
Q |
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| T |
11027296 |
ttatactatagcttctctccatgtg |
11027320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11026883 - 11026960
Alignment:
| Q |
1 |
caactgcaactactagacaagtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatata |
78 |
Q |
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| T |
11026883 |
caactgcaactactagacaagtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatata |
11026960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 10907349 - 10907415
Alignment:
| Q |
11 |
tactagacaagtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatat |
77 |
Q |
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| T |
10907349 |
tactagacaactaactcaagagttagatgtaattcaagagttagaatgacttacaattgtaaaatat |
10907415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 10931233 - 10931299
Alignment:
| Q |
11 |
tactagacaagtaacccacaatttagatgtaattcaagagatagattgacttacaattgtgaaatat |
77 |
Q |
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| T |
10931233 |
tactagacaactaactcaagagttggatgtaattcaagagttagattgacttacaattgtaaaatat |
10931299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 10993459 - 10993503
Alignment:
| Q |
33 |
ttagatgtaattcaagagatagattgacttacaattgtgaaatat |
77 |
Q |
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| T |
10993459 |
ttagatgtaattcaagagttggaatgacttacaattgtaaaatat |
10993503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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