View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7824_high_12 (Length: 447)
Name: NF7824_high_12
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 16047163 - 16046771
Alignment:
| Q |
10 |
aataatatgaggttaacaatacaaaattaggggcacttaggtcctcctctcttagttctcatgttagcatagcatggacattcttccttgtgaccatatg |
109 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16047163 |
aataatgtgagcttaacaatacaaaattaggggcacttaggtcctcctctcttagttctcatgttagcatagcatgggcattcttccttgtgaccatatg |
16047064 |
T |
|
| Q |
110 |
ttcctgatgggacacacaaacattttgcacaacagtagttgcaataggttagacatgccttcttgtacatagttgctgaacaacgaacatcacatgcacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16047063 |
ttcctgatgggacacacaaacattttgcacaacagtagttgcaataggttagacatgccttcttgtacatagttgctgaacaacgaacatcacatgcacc |
16046964 |
T |
|
| Q |
210 |
tgcacaatctgcag-nnnnnnntatttcagttgtgataacatcagtaaataaaattattttgcgtcgcaacgtattatttcataagaatatttagaaaat |
308 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16046963 |
tgcacaatctgcagaaaaaaaatatttcagttgcgataacattagtaaataaaattattttgcgtcgcaacgtattatttcataagaatatttagaaaat |
16046864 |
T |
|
| Q |
309 |
aaaaaatattagatagaattactaccttgaggacgaagagaaccttctccaccagcctatagagatannnnnnngcatttacaatagaaagtt |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16046863 |
aaaaaatattagatagaattactaccttgaggacgaagagaaccttctccaccagcctatagagatatattttttcatttacaatagaaagtt |
16046771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 16100291 - 16100117
Alignment:
| Q |
33 |
aaattaggggcacttaggtcctcctctcttagttctcatgttagcatagcatggacattcttccttgtgaccatatgttcctgatgggacacacaaacat |
132 |
Q |
| |
|
||||||||| ||||| ||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16100291 |
aaattagggacacttgggtcctccttcatgagttttcaagttagcatagcatggacattcttccttgtgaccatatgttcctgatgggacacacaaacat |
16100192 |
T |
|
| Q |
133 |
tttgcacaacagtagttgcaataggttagacatgccttcttgtacatagttgctgaacaacgaacatcacatgca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16100191 |
tttgcacaacagtagttgcaataggttagacatgccttcttgtacatagttgctgaacaacgaacatcacatgca |
16100117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 16095356 - 16095212
Alignment:
| Q |
33 |
aaattaggggcacttaggtcctcctctcttagttctcatgttagcatagcatggacattcttccttgtgaccatatgttcctgatgggacacacaaacat |
132 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| || || |||| ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
16095356 |
aaattaggggcacttgggtcctcctttcttatttttccagttattatagcatggacattcttccttgttaccatatgttcccgatgggacacataaacac |
16095257 |
T |
|
| Q |
133 |
tttgcacaacagtagttgcaataggttagacatgccttcttgtac |
177 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
16095256 |
tttgcacaacagaggttgcaataggttaaacatgccttcttgtac |
16095212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 16005797 - 16005946
Alignment:
| Q |
22 |
ttaacaatacaaaattaggggcacttaggtcctcctctcttagttctcatgttagcatagcatggacattcttccttgtgaccatatgttcctgatggga |
121 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| ||||| ||||| |||| |||||||||||||||||| ||||| ||| |||||||| ||||| | |
|
|
| T |
16005797 |
ttaacagtacaaaattaggggcacttgggtcctccattcttatttctccagttatcatagcatggacattcttgcttgttaccgtatgttcccgatggaa |
16005896 |
T |
|
| Q |
122 |
cacacaaacattttgcacaacagtagttgcaataggttagacatgccttc |
171 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
16005897 |
cacacaaacactttgcacaacaaaggttgcaataggttaaacatgccttc |
16005946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 16006097 - 16006150
Alignment:
| Q |
321 |
atagaattactaccttgaggacgaagagaaccttctccaccagcctatagagat |
374 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
16006097 |
atagaattactaccttgaggacgaagtgatccttctccaccagcctatagagat |
16006150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 447
Target Start/End: Complemental strand, 16046756 - 16046724
Alignment:
| Q |
415 |
tcagatttcagtgttaatttaaggggaaaacaa |
447 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
16046756 |
tcagatttcggtgttaatttaaggggaaaacaa |
16046724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 20872057 - 20872111
Alignment:
| Q |
78 |
atagcatggacattcttccttgtgaccatatgttcctgatgggacacacaaacat |
132 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
20872057 |
atagcatggacactcttccttgttaccataagttccggatgggacacacaaacat |
20872111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 35408952 - 35408887
Alignment:
| Q |
78 |
atagcatggacattcttccttgtgaccatatgttcctgatgggacacacaaacattttgcacaaca |
143 |
Q |
| |
|
|||||| |||||||||| |||| ||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
35408952 |
atagcacggacattcttgtttgttgccataagttccagatggaacacacaaacattttgcacaaca |
35408887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 1235041 - 1235119
Alignment:
| Q |
78 |
atagcatggacattcttccttgtgaccatatgttcctgatgggacacacaaacattttgcacaacagtagttgcaatag |
156 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| ||||||| || |||||||| |||||||||||||| || ||||||||| |
|
|
| T |
1235041 |
atagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcattttgcacaacaatacttgcaatag |
1235119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University