View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_high_13 (Length: 444)
Name: NF7824_high_13
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 50386471 - 50386896
Alignment:
| Q |
1 |
aaaactcagcctaggaacttgggttagttattacaaagatgaaggcttcaaactcaacattgaagacattattacccataaaagtacaacaagctcatca |
100 |
Q |
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| T |
50386471 |
aaaactcagcctaggaacttgggttagttattacaaagatgaaggcttcaaactcaacattgaagacattattacccataaaagtacaacaagctcatca |
50386570 |
T |
|
| Q |
101 |
tggatcattttcagtttatggaatacttgtgaagcttgtgacaataaccttcaagttaaaacaaaattatttcaaccacttaggtttcttcatgcgacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386571 |
tggatcattttcagtttatggaatacttgtgaagcttgtgacaataaccttcaagttaaaacaaaattatttcaaccacttaggtttcttcatgcgacat |
50386670 |
T |
|
| Q |
201 |
taaatcatgcaaaggacaaaatatgt-ccttgtttgagaatgtttgactcaatgtgtaacaacagtaca-tttgggtttctttttctttatggacttcat |
298 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50386671 |
taaatcatgcaaaggacaaaatatgtcccttgtttgagaatgtttgactcaatgtgtaacaacagtacattttgggtttctttttctttatggacttcat |
50386770 |
T |
|
| Q |
299 |
ggagagggagagaatcttggtgggctaatggaatcaatatggaggtttacatcaagattaggagaaaaattaaaggagtgtagggttgttataactgagt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386771 |
ggagagggagagaatcttggtgggctaatggaatcaatatggaggtttacatcaagattaggagaaaaattaaaggagtgtagggttgttataactgagt |
50386870 |
T |
|
| Q |
399 |
tagggtttggtgatccacttgtaaac |
424 |
Q |
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| T |
50386871 |
tagggtttggtgatccacttgtaaac |
50386896 |
T |
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