View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_high_16 (Length: 390)
Name: NF7824_high_16
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 2897724 - 2898083
Alignment:
| Q |
13 |
aatatctgtggtatgaaggggacaaacgtcatctatttcctaactggatcaagccagcagattcagagccaccacctcttttagtttacaaatggtgtca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2897724 |
aatatctgtggtatgaaggggacaaacgtcatctatttcctaactggatcaagccagcagattcagagccaccacctcttttagtttacaaatggtgtca |
2897823 |
T |
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| Q |
113 |
aggtataaataatttggaaggcatctgggacaccagtgatggtcactgcgttgtgatgttgcagaccaagtttgagaagtttttcgagaagattgatata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2897824 |
aggtataaataatttggaaggcatctgggacaccagtgatggtcactgcgttgtgatgttgcagaccaaatttgagaagtttttcgagaagattgatata |
2897923 |
T |
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| Q |
213 |
ctaatgttaaataggcttctccgtttggttctagaccacaacattgctgattatatcactgcaaaaaacaatgttgtgttgtcatacaaggatatgagcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2897924 |
ctaatgttaaataggcttctccgtttggttctagaccacaacattgctgattatatcactgcaaaaaacaatgttgtgttgtcatacaaggatatgagcc |
2898023 |
T |
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| Q |
313 |
acacgaataaatatggtcttatacgtggactacagtttgcctcctttgttgctcagtatt |
372 |
Q |
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| T |
2898024 |
acacgaataaatatggtcttatacgtggactacagtttgcctcctttgttgctcagtatt |
2898083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 44782087 - 44781873
Alignment:
| Q |
13 |
aatatctgtggtatgaaggggacaaacgtcatctatttcctaactggatcaagccagcagattcagagccaccacctcttttagtttacaaatggtgtca |
112 |
Q |
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| T |
44782087 |
aatatctgtggtatgaaggcgacaaacgtcatctctttcccaactggatcaagcctgcagattctgagccaccgcctcttctggtttacaaatggtgtca |
44781988 |
T |
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| Q |
113 |
aggtataaataatttggaaggcatctgggacaccagtgatggtcactgcgttgtgatgttgcagaccaagtttgagaagtttttcgagaagattgatata |
212 |
Q |
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|||||| ||||||||| || | ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| || |
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| T |
44781987 |
aggtatcaataatttgcaaagtgtctgggacaccagcgatggtcagtgcgttgtgatgctgcagaccaagtttgagaaatttttcgagaagattgattta |
44781888 |
T |
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| Q |
213 |
ctaatgttaaatagg |
227 |
Q |
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| T |
44781887 |
acaatgttaaatagg |
44781873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 225 - 372
Target Start/End: Complemental strand, 44781794 - 44781647
Alignment:
| Q |
225 |
aggcttctccgtttggttctagaccacaacattgctgattatatcactgcaaaaaacaatgttgtgttgtcatacaaggatatgagccacacgaataaat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||| ||||||||||| ||| || |
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| T |
44781794 |
aggcttctccgtttggttctagaccacaacattgctgattatgtcacggcaaaaaacaatgttgtgctgtcatataaggacatgagccacacaaattcat |
44781695 |
T |
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| Q |
325 |
atggtcttatacgtggactacagtttgcctcctttgttgctcagtatt |
372 |
Q |
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||||||||||||||||||| |||||||| || ||||||| ||| |||| |
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| T |
44781694 |
atggtcttatacgtggactgcagtttgcatcttttgttgttcaatatt |
44781647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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