View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7824_high_17 (Length: 390)
Name: NF7824_high_17
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_17 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 30431787 - 30431410
Alignment:
| Q |
13 |
aatatcaccgtctttcagtttgacataaccccttcccttagcttggcctctaaacatatacaaattggaaattcacaatcagtataaaaagagtttaatt |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30431787 |
aatatcatcgtctttcagtttgacataaccccttcccttagcttggcctctaaacatatacaaattggaaattcacaatcaatataaaaagagtttaatt |
30431688 |
T |
|
| Q |
113 |
ttcatccaccgtcggtataaaaagttttacatggttcacacatcataatcagtcatttgttcgactttagaagcaatgataataaaagccaaacattttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30431687 |
ttcatccaccgtcggtataaaaagttttacatggttcacacatcataatcagtcatttgttcgactttagaagcagtgataataaaagccaaacattttt |
30431588 |
T |
|
| Q |
213 |
tatgatccgactattatgatcaattgacagtgtaaaaattttacactgatagtgtataggaattcaattgttataaaaaatccaaaattatacctttgac |
312 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30431587 |
tatgatccgactgttatgatcaattgacagtgtaaaaattttacactgagagtgtataggaattcaattgttataaaaaatccaaaatcatacctttgac |
30431488 |
T |
|
| Q |
313 |
aaacagaatttgataaaaacgaaacagccaaaatcagaattgcgaattgcgagatagcagagaatatgctgaaacaac |
390 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30431487 |
aaacagaatttgagaaaaacgaaacagccaaaatcagaattgccaattgcgagatagcagagaatatgctgaaacaac |
30431410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 49266852 - 49266935
Alignment:
| Q |
181 |
agaagcaatgataataaaagccaaacattttttatgatccgactattatgatcaattgacagtgtaaaa--attttacactgat |
262 |
Q |
| |
|
||||| ||| ||||| ||||||| ||||||| || |||||||||||||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
49266852 |
agaagtaattataatttaagccaatcatttttaattatccgactattatgatttattggtagtgtaaaaatattttacactgat |
49266935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University