View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7824_high_2 (Length: 677)
Name: NF7824_high_2
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 201 - 664
Target Start/End: Original strand, 6855057 - 6855520
Alignment:
| Q |
201 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6855057 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
6855156 |
T |
|
| Q |
301 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgggccttaaacatgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6855157 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgggccttaaacatgga |
6855256 |
T |
|
| Q |
401 |
atccccccttatgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttcccatcaagggttttgaca |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6855257 |
atccccccttatgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttcccatcgagggttttgaca |
6855356 |
T |
|
| Q |
501 |
acccggactgtatataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaatatcttatttttcaggccacgaagcgcaattt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6855357 |
acccggactgtatataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaatatattatttttcaggccacgaagcgcaattt |
6855456 |
T |
|
| Q |
601 |
gcaaagttcnnnnnnntctatttatccacagagaaatatcatcactaaaaataaggaagaataa |
664 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6855457 |
gcaaagttcaaaaaaatctatttatccacagagaaatatcatcactaaaaataaggaagaataa |
6855520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 6823258 - 6823024
Alignment:
| Q |
99 |
aaaattaacaaaggaaacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaa |
197 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
6823258 |
aaaattcacaaagggaacaactctaataaattttgtgcttgtactataatcactcaaacctaaaattcctctgaaaagatatgt--ctcctttcataaaa |
6823161 |
T |
|
| Q |
198 |
ttcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
6823160 |
ttcatcccttcaaagcttgtttttcctttctctttcggatcttcagaacattcttgactatctttttctcttcaaccaagaaagctcgaatgattctttc |
6823061 |
T |
|
| Q |
298 |
tcgaacagcaccaccagataaaacaccaccatatgca |
334 |
Q |
| |
|
|| |||||| || ||| |||||| || || ||||||| |
|
|
| T |
6823060 |
tctaacagcgcctccacataaaatactacaatatgca |
6823024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 6854931 - 6855059
Alignment:
| Q |
20 |
ccaagggttcccttcgcattaggaaatactacaacgttcaaagatggttctctctatcattttcttcccttatttatacaaaattaacaaaggaaacaac |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6854931 |
ccaagggttcccttcacattaggaaatactacaacgttcaaagatggttctctctatcattttcttcccttatttatacaaaattaacaaaggaaacaac |
6855030 |
T |
|
| Q |
120 |
tctaatgaattttgtgcttgtactatatc |
148 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6855031 |
tctaatgaattttgtgcttgtactatatc |
6855059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 114 - 282
Target Start/End: Complemental strand, 24245859 - 24245690
Alignment:
| Q |
114 |
aacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaattcatcccttcaaag |
212 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||| ||| || ||| | | |||||||||| |
|
|
| T |
24245859 |
aacagctctaataaattttgtgcttttactataatcactcaaacctaaaactcctccaaaaagatctttatctcgtttaatgaaacttaacccttcaaag |
24245760 |
T |
|
| Q |
213 |
cttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
282 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
24245759 |
cttgcttttcctttgtcttttggatcttcaagactttcttgacgatcttttgctcttcaaccaagaaagc |
24245690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 293 - 392
Target Start/End: Complemental strand, 24245067 - 24244968
Alignment:
| Q |
293 |
ctttctcgaacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgggcctta |
392 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||||||| ||| || ||| |||| ||| ||||||||||| | |||||||||||||| ||||| |||| |
|
|
| T |
24245067 |
ctttctctaacagcacctccagataaaactccaccataggcacgattcacagtcctcctgtttctaggtaacctagatctcttgtactcagtgggtctta |
24244968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 481
Target Start/End: Complemental strand, 24242532 - 24242462
Alignment:
| Q |
412 |
tgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtc-ggtaaacaagctt |
481 |
Q |
| |
|
|||| |||||||||| ||||| |||||| |||||||||||||||||| | |||||| | ||||||||||| |
|
|
| T |
24242532 |
tgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagctt |
24242462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 2418844 - 2418914
Alignment:
| Q |
212 |
gcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
282 |
Q |
| |
|
||||| ||||| ||||| || |||||||||||||| ||||| ||||| ||||||| |||||| | |||||| |
|
|
| T |
2418844 |
gcttgcttttcttttgttttctggatcttcaaaactttcttaactattttttgctcttcaacaaggaaagc |
2418914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University