View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7824_high_20 (Length: 367)
Name: NF7824_high_20
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 53 - 359
Target Start/End: Complemental strand, 21684710 - 21684403
Alignment:
| Q |
53 |
tatgaactactatagtagcatataatagttttacatcatgattcaaaggtacattgacacatgatgttgtttgatgacacatgaattgtcaaagtaatca |
152 |
Q |
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| T |
21684710 |
tatgaactactatagtagcatataatagttttacatcatgattcaaaggtacattgacacatgatgttgtttgatgacacatgaattgtcaaagtaatca |
21684611 |
T |
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| Q |
153 |
tatgatatgacaaaatataattgcacaagggtatacaacttcttttacattgaaagagtgcataaaaatgaatctataaacaaaatttgatttacactaa |
252 |
Q |
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| T |
21684610 |
tatgatatgacaaaatataattgcacaagggtatacaacttcttttacattgaaagagtgcataaaaatgaatctataaacaaaatttgatttacactaa |
21684511 |
T |
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| Q |
253 |
acaaggtaccctgagtgaacattgcaataaccccaaattatgaaagatcttg-nnnnnnnnncacaaagaacatgttctattaaacaatagagtccttgc |
351 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21684510 |
acaaggtaccctgagtgaacattacaataaccccaaattatgaaagatcttgaaaaaaaaaacacaaagaacatgttctattaaacaatagagtccttgc |
21684411 |
T |
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| Q |
352 |
ttcatttc |
359 |
Q |
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| T |
21684410 |
ttgatttc |
21684403 |
T |
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