View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7824_high_23 (Length: 347)
Name: NF7824_high_23
Description: NF7824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7824_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 11026886 - 11026567
Alignment:
| Q |
13 |
gttgcatcagtcctcctaggttgtctagattgggaatcaaaaggattgggaggtattggagttttatctatattttcctccaacatctgaaccaccattt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11026886 |
gttgcatcagtcctcctaggttgtctagattgggaatcaaaaggattgggaggtattggagttttgtctatattttcctccaacatctgaaccaccattt |
11026787 |
T |
|
| Q |
113 |
gcattgatggtcgatccatagcatgccactgaatgcaccatagtcccacaatggccatttttcttgcaattttttcatccccttcatcatcaatatgaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11026786 |
gcattgatggtcgatccatagcatgccactgaatgcaccatagtcccacaatggccatttttcttgcaattttttcatccccttcatcatcaatatgaat |
11026687 |
T |
|
| Q |
213 |
tttcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttccttcctcct |
312 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11026686 |
tttcatttcctcttcatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttccttcctcct |
11026587 |
T |
|
| Q |
313 |
attgtttcaagcaacatcat |
332 |
Q |
| |
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|||||||||||||||||||| |
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| T |
11026586 |
attgtttcaagcaacatcat |
11026567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 25 - 332
Target Start/End: Complemental strand, 10993418 - 10993111
Alignment:
| Q |
25 |
ctcctaggttgtctagattgggaatcaaaaggattgggaggtattggagttttatctatattttcctccaacatctgaaccaccatttgcattgatggtc |
124 |
Q |
| |
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|||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||| || | |||||||||||||||||||||||||||||| ||||| |
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| T |
10993418 |
ctcctaggttgtctagattgagaagcaaatggattgggaggtattggagttttgtctacatctccctccaacatctgaaccaccatttgcattgttggtc |
10993319 |
T |
|
| Q |
125 |
gatccatagcatgccactgaatgcaccatagtcccacaatggccatttttcttgcaattttttcatccccttcatcatcaatatgaattttcatttcctc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||| |||||||||| |
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| T |
10993318 |
gatccatagcatgccactgaatgcaccatagtcccacaatggccattttccttgcaactttttcatccccttcatcgtcaacatgaattctcatttcctc |
10993219 |
T |
|
| Q |
225 |
ttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttccttcctcctattgtttcaagc |
324 |
Q |
| |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||| |
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| T |
10993218 |
ttcatcatctataagtttataaatccattccggatagtaaacatgactactgttttcctctaaatcctctgtgattttcttccctcctattgtttcaagc |
10993119 |
T |
|
| Q |
325 |
aacatcat |
332 |
Q |
| |
|
|||||||| |
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|
| T |
10993118 |
aacatcat |
10993111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 25 - 332
Target Start/End: Complemental strand, 10931214 - 10930907
Alignment:
| Q |
25 |
ctcctaggttgtctagattgggaatcaaaaggattgggaggtattggagttttatctatattttcctccaacatctgaaccaccatttgcattgatggtc |
124 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| ||||||||||||||||| || | || | |||||||||||||||||||||||||||||| ||||| |
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| T |
10931214 |
ctcctaggttgtctagattgagaagcaaaaggatttggaggtattggagttttgtcgacatctccctccaacatctgaaccaccatttgcattgttggtc |
10931115 |
T |
|
| Q |
125 |
gatccatagcatgccactgaatgcaccatagtcccacaatggccatttttcttgcaattttttcatccccttcatcatcaatatgaattttcatttcctc |
224 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| || ||| |||||||||| |
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| T |
10931114 |
gatgcatagcatgccactgaatgcaccataatcccacaatggccattttccttgcaattttttcatccccttcatcgtcaacctgtattctcatttcctc |
10931015 |
T |
|
| Q |
225 |
ttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttccttcctcctattgtttcaagc |
324 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |
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| T |
10931014 |
ttgatcatctataagattataaatccactccggatagtaaacatgactactgttttcctctaagtcctctgttatcttcttccctcctattgtttcaagc |
10930915 |
T |
|
| Q |
325 |
aacatcat |
332 |
Q |
| |
|
|||||||| |
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|
| T |
10930914 |
aacatcat |
10930907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 26 - 332
Target Start/End: Complemental strand, 11041576 - 11041270
Alignment:
| Q |
26 |
tcctaggttgtctagattgggaatcaaaaggattgggaggtattggagttttatctatattttcctccaacatctgaaccaccatttgcattgatggtcg |
125 |
Q |
| |
|
||||||| |||||||||| ||| |||| ||||| ||||||||||||||||| ||| || | |||||||||| |||||||||||||||||||||||||| |
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|
| T |
11041576 |
tcctaggccgtctagattgagaagcaaagggatttggaggtattggagttttgtcttcatctccctccaacatttgaaccaccatttgcattgatggtcg |
11041477 |
T |
|
| Q |
126 |
atccatagcatgccactgaatgcaccatagtcccacaatggccatttttcttgcaattttttcatccccttcatcatcaatatgaattttcatttcctct |
225 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
11041476 |
atccatagcatgccactgaatgcaccaaagtcccacgatggccatttttcttgcaattttttcatccccttcatcatcaacatgaattctcatttcctct |
11041377 |
T |
|
| Q |
226 |
tgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttccttcctcctattgtttcaagca |
325 |
Q |
| |
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| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||| |
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| T |
11041376 |
tcatcatctataagattataaatccactccggatagtaaacatgactactgttttcctctaaatcctctgtgatcttcttccctcctatcgtttcaagca |
11041277 |
T |
|
| Q |
326 |
acatcat |
332 |
Q |
| |
|
||||||| |
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|
| T |
11041276 |
acatcat |
11041270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 25 - 332
Target Start/End: Complemental strand, 10907330 - 10907024
Alignment:
| Q |
25 |
ctcctaggttgtctagattgggaatcaaaaggattgggaggtattggagttttatctatattttcctccaacatctgaaccaccatttgcattgatggtc |
124 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||||||||||||||||||||| || | || | |||||||||| ||||||||||||||||||||||||| |
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|
| T |
10907330 |
ctcctaggctgtctagattgagaagcaaaaggattgggaggtattggagttttgtcgacatctccctccaacatttgaaccaccatttgcattgatggtc |
10907231 |
T |
|
| Q |
125 |
gatccatagcatgccactgaatgcaccatagtcccacaatggccatttttcttgcaattttttcatccccttcatcatcaatatgaattttcatttcctc |
224 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| || |
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|
| T |
10907230 |
gatccatagcatgccactaaatgcaccagagtcccacaattgccattttccttgcaattttttcatccccttcatcatcaacatgaattctcatttcgtc |
10907131 |
T |
|
| Q |
225 |
ttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttccttcctcctattgtttcaagc |
324 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||| |
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| T |
10907130 |
ttgatcatctataagattatcaatccactccggatagtaaacatg-ctactgttttcctctaagtcctctgttatcttcttccctcctattgtttcaagc |
10907032 |
T |
|
| Q |
325 |
aacatcat |
332 |
Q |
| |
|
|||||||| |
|
|
| T |
10907031 |
aacatcat |
10907024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 9300649 - 9300602
Alignment:
| Q |
136 |
tgccactgaatgcaccatagtcccacaatggccatttttcttgcaatt |
183 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
9300649 |
tgccactgaatgcaccataatcccacaattgccattttttttgcaatt |
9300602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 8962896 - 8962828
Alignment:
| Q |
96 |
catctgaaccaccatttgcattgatggtcgatccatagcatgccactgaatgcaccatagtcccacaat |
164 |
Q |
| |
|
|||||| |||||||||| ||| | |||||||| || | |||||||||||||||||| ||||| ||||| |
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|
| T |
8962896 |
catctgcaccaccattttcatggctggtcgatgcactgaatgccactgaatgcaccaaagtccgacaat |
8962828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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